Browse Element(s) Details


Os.27868.1.A1_s_at

Description gb:CB682804
DB_XREF= gi:29686529
DB_XREF=OSJNEf10H20.r
CLONE=OSJNEf10H20
TID=Os.27868.1
CNT=9
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.27868 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytochrome P450 (OJ1332_C12.16), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4416011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44120OsAffx.28896.1.S1_at11/117+26370301..26371359hypothetical protein
LOC_Os07g44120OsAffx.21755.1.S1_x_at1/117+26370301..26371359hypothetical protein
LOC_Os07g44130Os.47310.1.S1_at10/117+26374057..26375891Cytochrome P450 family protein, expressed
LOC_Os07g44140Os.9067.1.S1_at11/117+26380889..26382947Cytochrome P450 family protein, expressed
LOC_Os07g44160Os.27868.1.A1_s_at11/117+26392422..26395161transposon protein, putative, unclassified, expressed
LOC_Os07g44170OsAffx.28897.1.S1_at11/117+26395800..26397917pentatricopeptide, putative
LOC_Os07g44180Os.46402.1.S1_at11/117+26401979..26403015Hydrophobic protein LTI6B, putative, expressed
LOC_Os07g44190Os.13464.1.S1_at11/117+26405007..26407105H/ACA ribonucleoprotein complex subunit 4, putative, expressed
LOC_Os07g44200Os.52622.1.S1_at11/117+26411195..26412764DNA-binding storekeeper protein, putative, expressed
LOC_Os07g44210Os.23232.1.S1_at11/117+26415275..26427637SNF2 domain-containing protein, putative, expressed
LOC_Os07g44210OsAffx.6305.1.S1_at2/117+26415275..26427637SNF2 domain-containing protein, putative, expressed
LOC_Os07g44210OsAffx.15286.1.S1_at2/117+26415275..26427637SNF2 domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27868.1.A1_s_at--981--6191Chr07:26394618..26394642 (25 bp)
GAGGCACGATGCTGACGTTCCCGAT
LOC_Os07g44160
Os.27868.1.A1_s_at--527--8251Chr07:26394620..26394644 (25 bp)
GGCACGATGCTGACGTTCCCGATCG
LOC_Os07g44160
Os.27868.1.A1_s_at--1032--871Chr07:26394728..26394752 (25 bp)
ATGGCCAAGCTGCTGTCCTTCTCCA
LOC_Os07g44160
Os.27868.1.A1_s_at--106--9631Chr07:26394831..26394855 (25 bp)
TCAGGCTGGAGCTCTCGCCGGAGTA
LOC_Os07g44160
Os.27868.1.A1_s_at--841--9291Chr07:26394903..26394927 (25 bp)
TCCCCATGGTCGTCACACGCGTCCA
LOC_Os07g44160
Os.27868.1.A1_s_at--782--1591Chr07:26394945..26394969 (25 bp)
AGCGATTCGTCACCCCTCGGGAGGA
LOC_Os07g44160
Os.27868.1.A1_s_at--52--6571Chr07:26394948..26394972 (25 bp)
GATTCGTCACCCCTCGGGAGGACGT
LOC_Os07g44160
Os.27868.1.A1_s_at--496--4191Chr07:26394957..26394981 (25 bp)
CCCCTCGGGAGGACGTTATTTGCAT
LOC_Os07g44160
Os.27868.1.A1_s_at--423--4191Chr07:26394958..26394982 (25 bp)
CCCTCGGGAGGACGTTATTTGCATG
LOC_Os07g44160
Os.27868.1.A1_s_at--579--1891Chr07:26394969..26394993 (25 bp)
ACGTTATTTGCATGTCCATGTAAAT
LOC_Os07g44160
Os.27868.1.A1_s_at--1115--4992Chr07:26394978..26395002 (25 bp)
GCATGTCCATGTAAATAGTTATTAA
LOC_Os07g44160
Target Sequence 
GAGGCACGATGCTGACGTTCCCGATCGCGACGATGCACCGCGACGAGGAGGTGTGGGGCGCCGACGCCGGGGTGTTCGAC
CCGATGAGGTTCGACGGCGGCGGCGGCGCCATGGCCAAGCTGCTGTCCTTCTCCACGGGGCCGAGGGCGTGCGTCGGGCA
GAGCTTCGCCATGGTCGAGGCGAAGGCCGTCGTCGCCGCGATACTCNGGCGGTTCAGGCTGGAGCTCTCGCCGGAGTACG
TCCACGCGCCCACCGACGTCATCACGCTCCGCCCCAAGCACGGCCTCCCCATGGTCGTCACACGCGTCCACGCGTGACGT
GGATACAAGCGATTCGTCACCCCTCGGGAGGACGTTATTTGCATGTCCATGTAAATAGTTATTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27868.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis