Browse Element(s) Details


Os.41098.1.S1_at

Description gb:NM_193111.1
DB_XREF= gi:34913305
GEN=P0519E12.31
TID=Os.41098.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41098 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0519E12.31 (P0519E12.31), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0519E12.31 (P0519E12.31), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4398011/11DEAD/DEAH box helicase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43950Os.38021.1.S1_at11/117+26263799..26266977RNA recognition motif family protein, expressed
LOC_Os07g43950OsAffx.28893.1.S1_at1/117+26263799..26266977RNA recognition motif family protein, expressed
LOC_Os07g43960OsAffx.28893.1.S1_at11/117+26269508..26271247expressed protein
LOC_Os07g43970Os.34315.1.S1_at11/117+26286279..26289370calmodulin-binding family protein, putative, expressed
LOC_Os07g43980Os.41098.1.S1_at11/117+26290499..26294460DEAD/DEAH box helicase family protein, expressed
LOC_Os07g43990Os.8175.1.S1_at11/117+26296631..26298846expressed protein
LOC_Os07g44000OsAffx.28894.1.S1_at11/117+26299652..26300601hypothetical protein
LOC_Os07g44010OsAffx.5630.1.S1_x_at11/117+26306253..26306835expressed protein
LOC_Os07g44020Os.41096.1.S1_at11/117+26307425..26309991DedA family protein, expressed
LOC_Os07g44030OsAffx.28966.1.S1_at11/117+26311499..26313157myb family transcription factor, putative

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Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41098.1.S1_at--48--9951Chr07:26292254..26292278 (25 bp)
TACGTTCGGTGATTGTGTTTGTCTC
LOC_Os07g43980
Os.41098.1.S1_at--1070--2771Chr07:26291860..26291884 (25 bp)
AAGAGCTTGGTCATCCTGCTGTTTC
LOC_Os07g43980
Os.41098.1.S1_at--130--10751Chr07:26291834..26291858 (25 bp)
TTGCACTCTCATAAGCCTCAGTCGA
LOC_Os07g43980
Os.41098.1.S1_at--985--9771Chr07:26291775..26291799 (25 bp)
TAAGGTTCCAGTTTTGCTTGCTACT
LOC_Os07g43980
Os.41098.1.S1_at--531--4851Chr07:26291756..26291780 (25 bp)
GCTACTGATGTAGCCAGTCGTGGTT
LOC_Os07g43980
Os.41098.1.S1_at--267--10071Chr07:26291595..26291723 (25 bp)
TATGACGTTCCAAGGTACCCACGAG
LOC_Os07g43980
Os.41098.1.S1_at--1045--7831Chr07:26291582..26291606 (25 bp)
GGTACCCACGAGATTACATCCATAG
LOC_Os07g43980
Os.41098.1.S1_at--791--6611Chr07:26291556..26291580 (25 bp)
GTTGGACGAACTGCAAGAGCTACTA
LOC_Os07g43980
Os.41098.1.S1_at--259--7651Chr07:26291530..26291554 (25 bp)
GGGAGGGCTCTCGATAAGCTTTATC
LOC_Os07g43980
Os.41098.1.S1_at--659--9791Chr07:26291521..26291540 (20 bp)
TAAGCTTTATCACAACCCAGAGAGA
LOC_Os07g43980
Os.41098.1.S1_at--217--9711Chr07:26290864..26290888 (25 bp)
TCAAAGCGAGGCGTCTTGCGAATAT
LOC_Os07g43980
Target Sequence 
TACGTTCGGTGATTGTGTTTGTCTCAACCTGCAGGACATGCCAATATTTGGATTTTCTGTTGGAAGAGCTTGGTCATCCT
GCTGTTTCCTTGCACTCTCATAAGCCTCAGTCGAGAAGGCTGGCAGCATTGCATAATTTCAAATCCAGTAAGGTTCCAGT
TTTGCTTGCTACTGATGTAGCCAGTCGTGGTTTGGATATCCAAACAGTTGATCTTGTTATCAACTATGACGTTCCAAGGT
ACCCACGAGATTACATCCATAGAGTTGGACGAACTGCAAGAGCTACTAGGGGAGGGCTCTCGATAAGCTTTATCACAACC
CAGAGAGATATACGTCTGTTACATGAGATAGAGGATGTTGTGGGGAAGCAATTAGGTGCATATGATGGCGAGATGAGAGA
TGTCAATAAAGATGCTACAAAGGTATTCAAAGCGAGGCGTCTTGCGAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41098.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis