Browse Element(s) Details


Os.38021.1.S1_at

Description gb:AK061338.1
DB_XREF= gi:32971356
TID=Os.38021.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38021 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative serinearginine-rich protein (P0519E12.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-303-C11, full insert sequence.
FL= gb:AK073451.1 gb:AK061338.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4395011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43870Os.23682.1.S1_at11/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870Os.23682.1.S1_s_at11/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870OsAffx.18864.1.S1_at1/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870OsAffx.17544.1.S1_at1/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870OsAffx.16132.1.S1_at1/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43890Os.13508.1.S1_at11/117+26240850..26243421emp24/gp25L/p24 family protein, putative, expressed
LOC_Os07g43900Os.11593.1.S1_x_at11/117+26243830..26248846protein kinase family protein, putative, expressed
LOC_Os07g43900OsAffx.16705.1.S1_at11/117+26243830..26248846protein kinase family protein, putative, expressed
LOC_Os07g43910OsAffx.9072.1.S1_at11/117+26252338..26252776hypothetical protein
LOC_Os07g43910OsAffx.19217.2.S1_at1/117+26252338..26252776hypothetical protein
LOC_Os07g43940Os.11198.3.S1_x_at10/117+26257567..26262128glucan endo-1,3-beta-glucosidase 4 precursor, putative, expressed
LOC_Os07g43940Os.11198.1.S1_a_at10/117+26257567..26262128glucan endo-1,3-beta-glucosidase 4 precursor, putative, expressed
LOC_Os07g43940Os.50043.1.A1_at1/117+26257567..26262128glucan endo-1,3-beta-glucosidase 4 precursor, putative, expressed
LOC_Os07g43950Os.38021.1.S1_at11/117+26263799..26266977RNA recognition motif family protein, expressed
LOC_Os07g43950OsAffx.28893.1.S1_at1/117+26263799..26266977RNA recognition motif family protein, expressed
LOC_Os07g43960OsAffx.28893.1.S1_at11/117+26269508..26271247expressed protein
LOC_Os07g43970Os.34315.1.S1_at11/117+26286279..26289370calmodulin-binding family protein, putative, expressed
LOC_Os07g43980Os.41098.1.S1_at11/117+26290499..26294460DEAD/DEAH box helicase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000398biological_processnuclear mRNA splicing, via spliceosome
GO:0016607cellular_componentnuclear speck
GO:0035061cellular_componentinterchromatin granule
GO:0003723molecular_functionRNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38021.1.S1_at--780--1671Chr07:26266227..26266251 (25 bp)
AGCCTTCTGAGATGAGATCTCGCGA
LOC_Os07g43950
Os.38021.1.S1_at--206--3091Chr07:26266336..26266356 (21 bp)
AATAAGTGGCAGCAGAGGTCGTTCC
LOC_Os07g43950
Os.38021.1.S1_at--628--7211Chr07:26266349..26266373 (25 bp)
GTCGTTCCTATGACCAAAGGTACTC
LOC_Os07g43950
Os.38021.1.S1_at--875--2311Chr07:26266364..26266388 (25 bp)
AAAGGTACTCTAGGTCACCGCGATA
LOC_Os07g43950
Os.38021.1.S1_at--97--7171Chr07:26266546..26266570 (25 bp)
GTCTCCTTCGCCTCGGTATGCAAGG
LOC_Os07g43950
Os.38021.1.S1_at--960--6011Chr07:26266583..26266607 (25 bp)
GAGAGGTCCTACTCACCAGTTGAGA
LOC_Os07g43950
Os.38021.1.S1_at--1004--8032Chr07:26266866..26266890 (25 bp)
GGAGTTGTTCTTGCTTTGTGCTTAT
LOC_Os07g43950
Os.38021.1.S1_at--380--7331Chr07:26266883..26266907 (25 bp)
GTGCTTATTTTGCTGTGGATTCTGT
LOC_Os07g43950
Os.38021.1.S1_at--1--10411Chr07:26266916..26266940 (25 bp)
TTTTGATATGGTTGCCCGGTGGATG
LOC_Os07g43950
Os.38021.1.S1_at--298--7971Chr07:26266942..26266966 (25 bp)
GGATCTGGCACGATGGTCGAACCTT
LOC_Os07g43950
Os.38021.1.S1_at--15--6251Chr07:26266953..26266977 (25 bp)
GATGGTCGAACCTTGGAGCATTTAC
LOC_Os07g43950
Target Sequence 
AGCCTTCTGAGATGAGATCTCGCGACAGAATAAGTGGCAGCAGAGGTCGTTCCTATGACCAAAGGTACTCTAGGTCACCG
CGATACTCTCCTCCTCCAAGGGGCCGCTCGCCTTACCGCAGCCCGAGCTACTCAAGGTCTCCTTCGCCTCGGTATGCAAG
GCGCAGGATGAGGGAGAGGTCCTACTCACCAGTTGAGAGCAGATCAAGGAGCAGGAGCCCGGTCGAGGAAGGATACGGTG
GTGGATCCACACGGAGAGAGAGGTCGCTCTCTGTCAGTGAATGAGGTCTAGAGCGCTANCGGTAATCTTCAACTNGTAGT
CGCTATGGCTTTGCGAACCATATGTTACTGTCGTGCTGTAGTGGTATCAATAACTTGGCAAATGTTGNGTCATTACGCCT
TTCCTGGAAGATNGCAAACATATTAAGTTACAACGCCGGTGAATTCTGCTCACTTTGGAGTTGTTCTTGCTTTGTGCTTA
TTTTGCTGTGGATTCTGTAGAAAACGTTTTGATATGGTTGCCCGGTGGATGGGGATCTGGCACGATGGTCGAACCTTGGA
GCATTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38021.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis