Browse Element(s) Details


Os.13508.1.S1_at

Description gb:AK060066.1
DB_XREF= gi:32970084
TID=Os.13508.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13508 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0519E12.19 (P0519E12.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-305-H05, full insert sequence.
FL= gb:AK060066.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4389011/11emp24/gp25L/p24 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43830OsAffx.28890.1.S1_at9/117+26215878..26217250expressed protein
LOC_Os07g43840OsAffx.16703.1.S1_at11/117+26218558..26219429zinc finger family protein, putative
LOC_Os07g43850OsAffx.9073.1.S1_x_at11/117+26222448..26223728hypothetical protein
LOC_Os07g43850OsAffx.9073.2.S1_at7/117+26222448..26223728hypothetical protein
LOC_Os07g43860OsAffx.28891.1.S1_at11/117+26224214..26224846hypothetical protein
LOC_Os07g43870Os.23682.1.S1_at11/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870Os.23682.1.S1_s_at11/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870OsAffx.18864.1.S1_at1/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870OsAffx.17544.1.S1_at1/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870OsAffx.16132.1.S1_at1/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43890Os.13508.1.S1_at11/117+26240850..26243421emp24/gp25L/p24 family protein, putative, expressed
LOC_Os07g43900Os.11593.1.S1_x_at11/117+26243830..26248846protein kinase family protein, putative, expressed
LOC_Os07g43900OsAffx.16705.1.S1_at11/117+26243830..26248846protein kinase family protein, putative, expressed
LOC_Os07g43910OsAffx.9072.1.S1_at11/117+26252338..26252776hypothetical protein
LOC_Os07g43910OsAffx.19217.2.S1_at1/117+26252338..26252776hypothetical protein
LOC_Os07g43940Os.11198.3.S1_x_at10/117+26257567..26262128glucan endo-1,3-beta-glucosidase 4 precursor, putative, expressed
LOC_Os07g43940Os.11198.1.S1_a_at10/117+26257567..26262128glucan endo-1,3-beta-glucosidase 4 precursor, putative, expressed
LOC_Os07g43940Os.50043.1.A1_at1/117+26257567..26262128glucan endo-1,3-beta-glucosidase 4 precursor, putative, expressed
LOC_Os07g43950Os.38021.1.S1_at11/117+26263799..26266977RNA recognition motif family protein, expressed
LOC_Os07g43950OsAffx.28893.1.S1_at1/117+26263799..26266977RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0016020cellular_componentmembrane
GO:0008320molecular_functionprotein carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13508.1.S1_at--447--7791Chr07:26241437..26241461 (25 bp)
GGTCTCCATCGGGTTCGAGTTCGAC
LOC_Os07g43890
Os.13508.1.S1_at--810--5551Chr07:26242931..26242955 (25 bp)
GAAACCATCAAATCTATCCATGAAG
LOC_Os07g43890
Os.13508.1.S1_at--284--1471Chr07:26243121..26243145 (25 bp)
AGAATGGCATGGCTCGGGTTCCTCT
LOC_Os07g43890
Os.13508.1.S1_at--1074--9331Chr07:26243134..26243158 (25 bp)
TCGGGTTCCTCTCACTCGGAATCTG
LOC_Os07g43890
Os.13508.1.S1_at--894--9411Chr07:26243149..26243173 (25 bp)
TCGGAATCTGCCTATCCGTCGCGGG
LOC_Os07g43890
Os.13508.1.S1_at--458--1611Chr07:26243179..26243203 (25 bp)
AGCTGTGGCACCTGAAGACCTTTTT
LOC_Os07g43890
Os.13508.1.S1_at--200--2711Chr07:26243214..26243238 (25 bp)
AAGCTTCTGTAGTTCTTCTCCAAGA
LOC_Os07g43890
Os.13508.1.S1_at--825--5071Chr07:26243257..26243281 (25 bp)
GCACGAAAGCGGCTAGGTGTACTTT
LOC_Os07g43890
Os.13508.1.S1_at--1060--7071Chr07:26243289..26243313 (25 bp)
GTCAAGTTTATGTTGCTTAGCGATT
LOC_Os07g43890
Os.13508.1.S1_at--604--3131Chr07:26243347..26243371 (25 bp)
AATTATATTTAACCGTGCGCCCTAG
LOC_Os07g43890
Os.13508.1.S1_at--788--4551Chr07:26243363..26243387 (25 bp)
GCGCCCTAGCTTTGTCCAGTTGAAA
LOC_Os07g43890
Target Sequence 
GGTCTCCATCGGGTTCGAGTTCGACTGGAGGAGCGGCGTCGCGGCCAAGGACTGGTCCAACGTCGCCAAGAAGGGGCAGG
TCGATGTGATGGAGATGGAGTTGAAGAAGCTAGAAGAAACCATCAAATCTATCCATGAAGAAATGTTTTACCTACGTGAA
AGGGAGGAGGAAATGCAGAACCTGAACAAGCAAACGAACTCAAGAATGGCATGGCTCGGGTTCCTCTCACTCGGAATCTG
CCTATCCGTCGCGGGGCTGCAGCTGTGGCACCTGAAGACCTTTTTTGAGAGAAAGAAGCTTCTGTAGTTCTTCTCCAAGA
TCAAAAGAATATATTGCAGCACGAAAGCGGCTAGGTGTACTTTTTTTTGTGTCAAGTTTATGTTGCTTAGCGATTACTTG
TAAGCAACGATGTGTATTATACTCTATAAATTATATTTAACCGTGCGCCCTAGCTTTGTCCAGTTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13508.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis