Browse Element(s) Details


Os.11198.1.S1_a_at

Description gb:AK071223.1
DB_XREF= gi:32981246
TID=Os.11198.1
CNT=14
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.11198 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0519E12.24 (P0519E12.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023085L24, full insert sequence.
FL= gb:AK061455.1 gb:AK071223.1 gb:AK104126.1 gb:AK109428.2 gb:AK104543.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4394010/11glucan endo-1,3-beta-glucosidase 4 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43870Os.23682.1.S1_at11/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870Os.23682.1.S1_s_at11/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870OsAffx.18864.1.S1_at1/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870OsAffx.17544.1.S1_at1/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870OsAffx.16132.1.S1_at1/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43890Os.13508.1.S1_at11/117+26240850..26243421emp24/gp25L/p24 family protein, putative, expressed
LOC_Os07g43900Os.11593.1.S1_x_at11/117+26243830..26248846protein kinase family protein, putative, expressed
LOC_Os07g43900OsAffx.16705.1.S1_at11/117+26243830..26248846protein kinase family protein, putative, expressed
LOC_Os07g43910OsAffx.9072.1.S1_at11/117+26252338..26252776hypothetical protein
LOC_Os07g43910OsAffx.19217.2.S1_at1/117+26252338..26252776hypothetical protein
LOC_Os07g43940Os.11198.3.S1_x_at10/117+26257567..26262128glucan endo-1,3-beta-glucosidase 4 precursor, putative, expressed
LOC_Os07g43940Os.11198.1.S1_a_at10/117+26257567..26262128glucan endo-1,3-beta-glucosidase 4 precursor, putative, expressed
LOC_Os07g43940Os.50043.1.A1_at1/117+26257567..26262128glucan endo-1,3-beta-glucosidase 4 precursor, putative, expressed
LOC_Os07g43950Os.38021.1.S1_at11/117+26263799..26266977RNA recognition motif family protein, expressed
LOC_Os07g43950OsAffx.28893.1.S1_at1/117+26263799..26266977RNA recognition motif family protein, expressed
LOC_Os07g43960OsAffx.28893.1.S1_at11/117+26269508..26271247expressed protein
LOC_Os07g43970Os.34315.1.S1_at11/117+26286279..26289370calmodulin-binding family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11198.1.S1_a_at--878--1751NONE
ACCGACCCCAGTTCAGGGCAATGCG
NONE
Os.11198.1.S1_a_at--840--1071Chr07:26258105..26258128 (24 bp)
AGGGCAATGCGTCTTCTCAGGAAGC
LOC_Os07g43940
Os.11198.1.S1_a_at--411--9631Chr07:26257987..26258112 (25 bp)
TCAGGAAGCTCCATGGCCGGAGGCA
LOC_Os07g43940
Os.11198.1.S1_a_at--631--9311Chr07:26257771..26257795 (25 bp)
TCCCTCGTTCTCTGATCAGCAGTTC
LOC_Os07g43940
Os.11198.1.S1_a_at--550--5111Chr07:26257745..26257769 (25 bp)
GCACTAGTTGGAGTTTGTCCATGTA
LOC_Os07g43940
Os.11198.1.S1_a_at--15--4971Chr07:26257714..26257738 (25 bp)
GCATATGGCATTATGTCATTCGTTA
LOC_Os07g43940
Os.11198.1.S1_a_at--882--10611Chr07:26257696..26257720 (25 bp)
TTCGTTATAAATTCACTCACCAGAG
LOC_Os07g43940
Os.11198.1.S1_a_at--340--9671Chr07:26257680..26257704 (25 bp)
TCACCAGAGAGAGTCAGTGACGACT
LOC_Os07g43940
Os.11198.1.S1_a_at--832--2011Chr07:26257658..26257682 (25 bp)
ACTCAGGAGTCAGAGTCACCTTGAC
LOC_Os07g43940
Os.11198.1.S1_a_at--1151--7091Chr07:26257644..26257668 (25 bp)
GTCACCTTGACATGTTTTATTCCCG
LOC_Os07g43940
Os.11198.1.S1_a_at--407--10211Chr07:26257627..26257651 (25 bp)
TATTCCCGAGTAAATGACCAGTGTT
LOC_Os07g43940
Target Sequence 
ACCGACCCCAGTTCAGGGCAATGCGTCTTCTCAGGAAGCTCCATGGCCGGAGGCACCACGCCGGCGGCGAACGCGCCGTC
CGCCGTCGGCCCGTTCACGCCGGGGTTCGGCAACGGGTCGTCGCCGACGTTCCCGGGGACGGGGAGCCCCGGCGGCGCGC
TGACCCCCTTCGACGCCGCCGACAGCGTCATGTCCGGCGCTCGCCGGGCGCTCTGCGCGCTGCTGCTGGCGTCGCCGATC
TTCCTCTCCCTCGTTCTCTGATCAGCAGTTCAGCACTAGTTGGAGTTTGTCCATGTAAATTATGCATATGGCATTATGTC
ATTCGTTATAAATTCACTCACCAGAGAGAGTCAGTGACGACTCAGGAGTCAGAGTCACCTTGACATGTTTTATTCCCGAG
TAAATGACCAGTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11198.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis