Browse Element(s) Details


Os.11593.1.S1_x_at

Description gb:NM_193100.1
DB_XREF= gi:34913283
GEN=P0519E12.20
TID=Os.11593.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.11593 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative protein kinase (P0519E12.20), mRNA.
PROD=putative protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4390011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43840OsAffx.16703.1.S1_at11/117+26218558..26219429zinc finger family protein, putative
LOC_Os07g43850OsAffx.9073.1.S1_x_at11/117+26222448..26223728hypothetical protein
LOC_Os07g43850OsAffx.9073.2.S1_at7/117+26222448..26223728hypothetical protein
LOC_Os07g43860OsAffx.28891.1.S1_at11/117+26224214..26224846hypothetical protein
LOC_Os07g43870Os.23682.1.S1_at11/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870Os.23682.1.S1_s_at11/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870OsAffx.18864.1.S1_at1/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870OsAffx.17544.1.S1_at1/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870OsAffx.16132.1.S1_at1/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43890Os.13508.1.S1_at11/117+26240850..26243421emp24/gp25L/p24 family protein, putative, expressed
LOC_Os07g43900Os.11593.1.S1_x_at11/117+26243830..26248846protein kinase family protein, putative, expressed
LOC_Os07g43900OsAffx.16705.1.S1_at11/117+26243830..26248846protein kinase family protein, putative, expressed
LOC_Os07g43910OsAffx.9072.1.S1_at11/117+26252338..26252776hypothetical protein
LOC_Os07g43910OsAffx.19217.2.S1_at1/117+26252338..26252776hypothetical protein
LOC_Os07g43940Os.11198.3.S1_x_at10/117+26257567..26262128glucan endo-1,3-beta-glucosidase 4 precursor, putative, expressed
LOC_Os07g43940Os.11198.1.S1_a_at10/117+26257567..26262128glucan endo-1,3-beta-glucosidase 4 precursor, putative, expressed
LOC_Os07g43940Os.50043.1.A1_at1/117+26257567..26262128glucan endo-1,3-beta-glucosidase 4 precursor, putative, expressed
LOC_Os07g43950Os.38021.1.S1_at11/117+26263799..26266977RNA recognition motif family protein, expressed
LOC_Os07g43950OsAffx.28893.1.S1_at1/117+26263799..26266977RNA recognition motif family protein, expressed
LOC_Os07g43960OsAffx.28893.1.S1_at11/117+26269508..26271247expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11593.1.S1_x_at--341--6211Chr07:26245729..26245751 (23 bp)
GAGGCGACCTTCATCAATACCTGAA
LOC_Os07g43900
Os.11593.1.S1_x_at--358--971Chr07:26245705..26245729 (25 bp)
AGGAGAAAGGTGCACTTGCCCCAGC
LOC_Os07g43900
Os.11593.1.S1_x_at--983--3111Chr07:26245671..26245694 (24 bp)
AATTTCGCACTAGACATTGCCAGGG
LOC_Os07g43900
Os.11593.1.S1_x_at--610--7591Chr07:26245016..26245040 (25 bp)
GGGCATGGCCTATCTTCATAATGAA
LOC_Os07g43900
Os.11593.1.S1_x_at--895--7031Chr07:26244865..26244889 (25 bp)
GTAAATTCTGCTGCCAATCACTTGA
LOC_Os07g43900
Os.11593.1.S1_x_at--907--151Chr07:26244814..26244838 (25 bp)
ATTATCAAAGCCCAGCATGCCAATG
LOC_Os07g43900
Os.11593.1.S1_x_at--167--7591Chr07:26244683..26244795 (25 bp)
GGGAGACTGGAAGCTACCGGTACAT
LOC_Os07g43900
Os.11593.1.S1_x_at--4--1791Chr07:26244668..26244692 (25 bp)
ACCGGTACATGGCTCCTGAAGTATT
LOC_Os07g43900
Os.11593.1.S1_x_at--794--8871Chr07:26244616..26244640 (25 bp)
TGATGTCTTCTCGTTTGCTATGATA
LOC_Os07g43900
Os.11593.1.S1_x_at--727--7971Chr07:26244472..26244496 (25 bp)
GGATCCACCTTTCTCTAACTATGAA
LOC_Os07g43900
Os.11593.1.S1_x_at--267--7671Chr07:26244235..26244259 (25 bp)
GGGATATCCATCTGAGGCCATCTTT
LOC_Os07g43900
Target Sequence 
GAGGCGACCTTCATCAATACCTGAAGGAGAAAGGTGCACTTGCCCCAGCAACTGCTGTTAATTTCGCACTAGACATTGCC
AGGGGCATGGCCTATCTTCATAATGAACCTAATGTTGTAATTCACCGGGACTTAAAACCAAGAAACATTCTTCTAGTAAA
TTCTGCTGCCAATCACTTGAAAGTTGGAGATTTTGGTCTTAGCAAGATTATCAAAGCCCAGCATGCCAATGATGTGTACA
AGATGACTGGGGAGACTGGAAGCTACCGGTACATGGCTCCTGAAGTATTCAAACACCGGAAATATGACAAGAAAGTTGAT
GTCTTCTCGTTTGCTATGATACTTTACGAGATGCTTGAAGGGGATCCACCTTTCTCTAACTATGAACCTTATGAAGCCGC
AAAGTATGTGGGAGAAGGGCATCGCCCACCCTTTCGTTCGAAGGGATTTACTAACGAGTTAAAGGAGTTAATTGAGCTAT
GCTGGTCCGGGGATATCCATCTGAGGCCATCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11593.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis