Browse Element(s) Details


Os.14274.1.S1_at

Description gb:BM419837
DB_XREF= gi:18386639
DB_XREF=R019E04
CLONE=R019E04
TID=Os.14274.1
CNT=8
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.14274 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T00588 (A.thaliana) T00588 hypothetical protein T27E13.16 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g285009/11ubiquitin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28460OsAffx.27061.1.S1_at11/115+16581844..16583357expressed protein
LOC_Os05g28470OsAffx.27062.1.S1_at11/115+16584115..16590366hypothetical protein
LOC_Os05g28470Os.22914.1.A1_at10/115+16584115..16590366hypothetical protein
LOC_Os05g28480Os.25494.1.S1_at6/115+16591887..16594358hypothetical protein
LOC_Os05g28490OsAffx.28933.1.S1_x_at5/115+16599513..16600388hypothetical protein
LOC_Os05g28490OsAffx.28933.2.S1_x_at1/115+16599513..16600388hypothetical protein
LOC_Os05g28500Os.14274.1.S1_at9/115+16606063..16610081ubiquitin family protein, putative, expressed
LOC_Os05g28510Os.3381.1.S1_a_at11/115+16615815..16620585Importin-beta N-terminal domain containing protein, expressed
LOC_Os05g28520Os.27154.1.S1_at11/115+16621099..16623986ser-thr protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006512biological_processubiquitin cycle
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14274.1.S1_at--157--8111Chr05:16609625..16609649 (25 bp)
GGACCGTGCGTCATATATCTATACG
LOC_Os05g28500
Os.14274.1.S1_at--1146--9531Chr05:16609642..16609666 (25 bp)
TCTATACGTGCGCAAGTTCAAACTA
LOC_Os05g28500
Os.14274.1.S1_at--50--2531Chr05:16609662..16609686 (25 bp)
AACTATGGATGATGCACATGCTGTG
LOC_Os05g28500
Os.14274.1.S1_at--38--4311Chr05:16609689..16609713 (25 bp)
CCTATCTGGCTCTGAAGTTACTTAT
LOC_Os05g28500
Os.14274.1.S1_at--780--6771Chr05:16609705..16609729 (25 bp)
GTTACTTATGCTCATGTGAAGCTGG
LOC_Os05g28500
Os.14274.1.S1_at--849--4891Chr05:16609731..16609755 (25 bp)
GCTTCAAATGCTTTTGAGGGCTCTG
LOC_Os05g28500
Os.14274.1.S1_at--709--1391Chr05:16609763..16609787 (25 bp)
AGACGCTAGAAGACTCTGACTGGGA
LOC_Os05g28500
Os.14274.1.S1_at--393--4711Chr05:16609798..16609822 (25 bp)
GCTGGTACATATTTACGGTTCCTTG
LOC_Os05g28500
Os.14274.1.S1_at--812--8071Chr05:16609871..16609895 (25 bp)
GGAGCTATTTGTTGGACGAGACTAC
LOC_Os05g28500
Os.14274.1.S1_at--700--3591NONE
CATTGAGTGGCATTGGCCGTGGCCA
NONE
Os.14274.1.S1_at--1060--6351NONE
GATGCCACGATGATTATTGCCACCC
NONE
Target Sequence 
GGACCGTGCGTCATATATCTATACGTGCGCAAGTTCAAACTATGGATGATGCACATGCTGTGANCCTATCTGGCTCTGAA
GTTACTTATGCTCATGTGAAGCTGGAGCTTCAAATGCTTTTGAGGGCTCTGGTGAAGGAGACGCTAGAAGACTCTGACTG
GGAGGGTGAANNAGCTGGTACATATTTACGGTTCCTTGTATATTTTTGGCTGAAAAGGAGCTCGATTCGAGTTGTTCATC
CTCGTCGGAGCTATTTGTTGGACGAGACTACGAGAGTACATACAGAATTTGTAAATCTTCAGTGCTGCCATCACCNGGTT
GGTGGTGAAACGAGGACANTAGTTGGTGTAGGGTATCGTACACGAGACTGTCGATNCANTGTACACNTTNCCTTTCGGAC
CTTCTAATTGTATAGTCCTGGTATATATGNGAAAAGAAAAGGGANCANTTNTAAAGTNANNCANACCTTTGTAAAAGGTT
TACAAATTGTAACCACTAGTACCANTCCATTGAGTGGCATTGGCCGTGGCCACGTGGCGACCCGATGCCACGATGATTAT
TGCCACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14274.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis