Browse Element(s) Details


Os.14430.1.S1_at

Description gb:AK104655.1
DB_XREF= gi:32989864
TID=Os.14430.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.14430 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-311-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-311-C06, full insert sequence.
FL= gb:AK104181.1 gb:AK104655.1 gb:AK104630.1 gb:AK061195.1 gb:AK061421.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2054011/11Fasciclin domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20490Os.51211.1.S1_at11/112+12086013..12089345expressed protein
LOC_Os02g20500OsAffx.2696.1.S1_x_at11/112+12089710..12091108hypothetical protein
LOC_Os02g20500OsAffx.2696.1.S1_at11/112+12089710..12091108hypothetical protein
LOC_Os02g20510OsAffx.2697.1.S1_at11/112+12100867..12101382hypothetical protein
LOC_Os02g20520OsAffx.12135.1.S1_x_at8/112+12103228..12105794hypothetical protein
LOC_Os02g20520OsAffx.12135.1.S1_at8/112+12103228..12105794hypothetical protein
LOC_Os02g20530OsAffx.12136.1.S1_at11/112+12106516..12110223hypothetical protein
LOC_Os02g20540Os.14430.1.S1_at11/112+12113917..12114962Fasciclin domain containing protein, expressed
LOC_Os02g20550OsAffx.2698.1.S1_at11/112+12123596..12123874hypothetical protein
LOC_Os02g20560Os.17961.1.S1_a_at11/112+12127922..12129229Fasciclin domain containing protein, expressed
LOC_Os02g20570Os.46785.2.S1_x_at4/112+12134248..12138246retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g20570OsAffx.30226.2.S1_x_at2/112+12134248..12138246retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g20570OsAffx.442.1.S1_x_at1/112+12134248..12138246retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14430.1.S1_at--747--7591Chr02:12114406..12114430 (25 bp)
GGGCAGAGCCTCGTCAACGTGTCCA
LOC_Os02g20540
Os.14430.1.S1_at--17--1311Chr02:12114291..12114315 (25 bp)
AGATGTTCGGGAAGGCCAAGGCTCC
LOC_Os02g20540
Os.14430.1.S1_at--812--8191Chr02:12114234..12114258 (25 bp)
GGAAGGGCGCCAATAAGGAGCACAA
LOC_Os02g20540
Os.14430.1.S1_at--427--3931Chr02:12114203..12114227 (25 bp)
CGGCGCCATGCCCAAGAATGAGGTC
LOC_Os02g20540
Os.14430.1.S1_at--1042--4372Chr04:7033942..7034125 (25 bp)
CCAAGAATGAGGTCGCGGCCACCGC
NONE
Os.14430.1.S1_at--688--3371Chr02:12114122..12114146 (25 bp)
CACCAATGCGGTGGCCGTTGCAGGC
LOC_Os02g20540
Os.14430.1.S1_at--383--3191Chr02:12114056..12114080 (25 bp)
CAATCTTGTCATCGCGTAGAAAGTG
LOC_Os02g20540
Os.14430.1.S1_at--473--5571Chr02:12114038..12114062 (25 bp)
GAAAGTGTGTGCTTGTCTTTTTCTC
LOC_Os02g20540
Os.14430.1.S1_at--1050--6791Chr02:12113996..12114020 (25 bp)
GTTTTCGTCGTTGCATATGTTTCAT
LOC_Os02g20540
Os.14430.1.S1_at--845--6831Chr02:12113978..12114002 (25 bp)
GTTTCATTGCACGTGTCCTATTTTG
LOC_Os02g20540
Os.14430.1.S1_at--88--5111Chr02:12113970..12113994 (25 bp)
GCACGTGTCCTATTTTGTATGTATG
LOC_Os02g20540
Target Sequence 
GGGCAGAGCCTCGTCAACGTGTCCACCGGCGTCGCCGCCGTCCCCCTCGGCACCACGCTCTCCGCCGACTTCCCGCTCGC
CGTCTACTCCGTCGACGGCGTGCTCCTGCCGGAGCAGATGTTCGGGAAGGCCAAGGCTCCCGCGCCGGCCGCCGCGCCCG
CGTCCGCCGCCGGGAAGGGCGCCAATAAGGAGCACAAGAAGGGCGGCGCCATGCCCAAGAATGAGGTCGCGGCCACCGCG
CCGACGGCCGGAGCTGGAGGAGAAGATTCAGATGACAGCGCCACCACCAATGCGGTGGCCGTTGCAGGCGCGGCCGGTGT
GGTGTGGACTGCTGCTCTCGTGGGGATTGCCAATCTTGTCATCGCGTAGAAAGTGTGTGCTTGTCTTTTTCTCCTTCGCC
GTTTTCTTTCGTTTTCGTCGTTGCATATGTTTCATTGCACGTGTCCTATTTTGTATGTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14430.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis