Browse Element(s) Details


Os.14486.1.S1_at

Description gb:AK101763.1
DB_XREF= gi:32986972
TID=Os.14486.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.14486 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033064C18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033064C18, full insert sequence.
FL= gb:AK058541.1 gb:AK101763.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5202011/11DNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51990NANA4+30650588..30652665Transferase family protein, expressed
LOC_Os04g52000Os.11204.1.S1_at11/114+30656143..30660431Protein phosphatase 2C containing protein, expressed
LOC_Os04g52020Os.14486.1.S1_at11/114+30669078..30684842DNA-binding protein, putative, expressed
LOC_Os04g52020Os.50538.1.S1_at2/114+30669078..30684842DNA-binding protein, putative, expressed
LOC_Os04g52030OsAffx.26568.1.S1_at11/114+30685461..30688586zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os04g52040OsAffx.14372.1.S1_at11/114+30689432..30694576zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os04g52040OsAffx.14372.2.S1_at11/114+30689432..30694576zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os04g52040Os.18049.2.S1_s_at11/114+30689432..30694576zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os04g52040Os.18049.1.S1_at11/114+30689432..30694576zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os04g52050Os.27082.1.S1_at11/114+30695142..30700241expressed protein
LOC_Os04g52060OsAffx.26569.1.S1_x_at11/114+30701490..30706497Transposable element protein, putative, Transposase_24, expressed
LOC_Os04g52060Os.20706.1.S1_at11/114+30701490..30706497Transposable element protein, putative, Transposase_24, expressed
LOC_Os04g52060OsAffx.26569.1.S1_at11/114+30701490..30706497Transposable element protein, putative, Transposase_24, expressed
LOC_Os04g52074Os.23898.1.S1_at11/114+30708554..30715020expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14486.1.S1_at--726--2671Chr04:30670027..30670050 (24 bp)
AAGCAGGTTCGTCAAAGTCACAAGC
LOC_Os04g52020
Os.14486.1.S1_at--1096--3231Chr04:30670007..30670031 (25 bp)
CAAGCGAGTACGTGTTGTCCGTTTA
LOC_Os04g52020
Os.14486.1.S1_at--555--8111Chr04:30669952..30669976 (25 bp)
GGACTACTCATTCCGAATTCAGCTG
LOC_Os04g52020
Os.14486.1.S1_at--706--131Chr04:30669498..30669941 (25 bp)
ATTAACAGGCTTACAGTGGGTCCAA
LOC_Os04g52020
Os.14486.1.S1_at--731--9591Chr04:30669427..30669451 (25 bp)
TCATATTGGTGGTGTCGATCGCTTT
LOC_Os04g52020
Os.14486.1.S1_at--1097--7451Chr04:30669416..30669440 (25 bp)
GTGTCGATCGCTTTCTGATGTTAGA
LOC_Os04g52020
Os.14486.1.S1_at--830--1511Chr04:30669388..30669412 (25 bp)
AGCAGCTCAGAGGTGCGGCACATTT
LOC_Os04g52020
Os.14486.1.S1_at--557--7831Chr04:30669293..30669317 (25 bp)
GGTAAATACACCCTCAACTTCTGTA
LOC_Os04g52020
Os.14486.1.S1_at--887--4171Chr04:30669242..30669266 (25 bp)
CCCTCTTTTCTATTTCCTTGTTATG
LOC_Os04g52020
Os.14486.1.S1_at--798--871Chr04:30669140..30669164 (25 bp)
ATGGCGCCATACTGTTTCGGAGGAA
LOC_Os04g52020
Os.14486.1.S1_at--911--6131Chr04:30669121..30669145 (25 bp)
GAGGAATAGGCCACGGTTGCTTATT
LOC_Os04g52020
Target Sequence 
AAGCAGGTTCGTCAAAGTCACAAGCGAGTACGTGTTGTCCGTTTAGAGACAACAACTGACAATCAGCGAATCGTTGGACT
ACTCATTCCGAATTCAGCTGTGGAGTCAGTATTAACAGGCTTACAGTGGGTCCAAGATATTGATGACTGACATGGATAGG
CTTGATTTGTTTTGTTCACATTCATATTGGTGGTGTCGATCGCTTTCTGATGTTAGATGCAGCAGCTCAGAGGTGCGGCA
CATTTGATTTTGTTTTTTTATTGAGCCAGCAAGCTAATATGACTAATGTGACAGTGTCAACTTAGAAATTAGGCAGGTAA
ATACACCCTCAACTTCTGTATGTAAAAGATGTGGTGTACCCTACCCCCCTCTTTTCTATTTCCTTGTTATGTTGTATATT
GGGATGTAAAACAACTAAACCCCAGCTTATATCAGAAAAAAGAAAAATGCGAGGGCGCACCCACCAATATGGCGCCATAC
TGTTTCGGAGGAATAGGCCACGGTTGCTTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14486.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis