Browse Element(s) Details


Os.14494.1.S1_at

Description gb:AK069354.1
DB_XREF= gi:32979378
TID=Os.14494.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14494 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023018H14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023018H14, full insert sequence.
FL= gb:AK069354.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2314011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23100Os.55409.1.S1_at10/118+13780107..13786943cyclase family protein, putative, expressed
LOC_Os08g23100OsAffx.15945.1.S1_at1/118+13780107..13786943cyclase family protein, putative, expressed
LOC_Os08g23110Os.33205.1.S1_at11/118+13787131..13792601tRNA synthetases class I family protein, expressed
LOC_Os08g23110Os.33205.1.S1_x_at11/118+13787131..13792601tRNA synthetases class I family protein, expressed
LOC_Os08g23120Os.9869.1.S1_at11/118+13797608..13801838RNA recognition motif family protein, expressed
LOC_Os08g23130Os.50452.2.S1_x_at11/118+13804750..13809222Oligopeptide transporter 5, putative, expressed
LOC_Os08g23140Os.14494.1.S1_at11/118+13810994..13817843expressed protein
LOC_Os08g23140Os.53108.1.S1_at1/118+13810994..13817843expressed protein
LOC_Os08g23150Os.17629.1.A1_at11/118+13821689..13825571Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os08g23150OsAffx.21707.1.S1_at1/118+13821689..13825571Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os08g23160Os.33704.3.S1_x_at5/118+13834051..13839223hypothetical protein
LOC_Os08g23170Os.55292.1.S1_at11/118+13840300..13840954expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14494.1.S1_at--609--3931Chr08:13817055..13817079 (25 bp)
CGGAAATCAGCGAAGTACTCCAATT
LOC_Os08g23140
Os.14494.1.S1_at--887--8951Chr08:13817081..13817105 (25 bp)
TGACACCCATCCTTAGATCTATGAC
LOC_Os08g23140
Os.14494.1.S1_at--54--6431Chr08:13817096..13817120 (25 bp)
GATCTATGACATCTGCAAGTTGTAT
LOC_Os08g23140
Os.14494.1.S1_at--988--7931Chr08:13817148..13817172 (25 bp)
GGATTATGTCTTTACTTTTCAGAGT
LOC_Os08g23140
Os.14494.1.S1_at--390--3011Chr08:13817197..13817218 (22 bp)
AATGCAATTTCTGGCTTTCTTGCTC
LOC_Os08g23140
Os.14494.1.S1_at--206--5611Chr08:13817372..13817396 (25 bp)
GAAATTGAGTACTTTCAGTCTCTTG
LOC_Os08g23140
Os.14494.1.S1_at--581--7711Chr08:13817585..13817609 (25 bp)
GGTGGCGAAGCCATGGATCTAAGCT
LOC_Os08g23140
Os.14494.1.S1_at--679--2651Chr08:13817605..13817629 (25 bp)
AAGCTAAACTTGTCCGTAGTGCGTA
LOC_Os08g23140
Os.14494.1.S1_at--508--6931Chr08:13817620..13817644 (25 bp)
GTAGTGCGTAATGGCCACAGTTACA
LOC_Os08g23140
Os.14494.1.S1_at--169--251Chr08:13817660..13817684 (25 bp)
ATATACATGTTACTGCTTTGGGATA
LOC_Os08g23140
Os.14494.1.S1_at--84--5771Chr08:13817717..13817741 (25 bp)
GACGTCTAGTCGTCTACCAGTGGAA
LOC_Os08g23140
Target Sequence 
CGGAAATCAGCGAAGTACTCCAATTCTGACACCCATCCTTAGATCTATGACATCTGCAAGTTGTATTATGCCTATTTTTG
GGTGAAACTGAAAGGATTATGTCTTTACTTTTCAGAGTAAGCAGGTCATAGAGCAAGAGAAAAATGCAATTTCTGGCTTT
CTTGCTCCNCTACNACAGATGGATATGAAATCCTTAGAGGAGGNAACACNAAGCTCTACAAGCNTGATAAAGCTGGAGAA
ATTGAGTACTTTCAGTCTCTTGNAAGAACGTATANAATGAAATGAAGGGAGTTTCTGATGCAGTAAAATGCCGTTGCGGA
NTGGAGTACAAGGTCGAACTAGGTGGCGAAGCCATGGATCTAAGCTAAACTTGTCCGTAGTGCGTAATGGCCACAGTTAC
ACACTGTAAAATGCTTATATACATGTTACTGCTTTGGGATAGTTTGACAACTTCATATCGAGATTATATTGATGACGTCT
AGTCGTCTACCAGTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14494.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis