Browse Element(s) Details


Os.14533.1.S1_a_at

Description gb:AK065157.1
DB_XREF= gi:32975175
TID=Os.14533.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14533 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002B21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002B21, full insert sequence.
FL= gb:AK065157.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g162403/11Isoflavone reductase homolog, putative, expressed
LOC_Os12g162201/11Isoflavone reductase homolog, putative, expressed
LOC_Os12g164101/11Isoflavone reductase homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g16200Os.7101.1.S1_at11/1112+9260060..9267515glutathione synthetase, putative, expressed
LOC_Os12g16200OsAffx.10222.1.S1_x_at2/1112+9260060..9267515glutathione synthetase, putative, expressed
LOC_Os12g16200Os.51841.1.S1_x_at1/1112+9260060..9267515glutathione synthetase, putative, expressed
LOC_Os12g16210Os.54139.1.S1_at11/1112+9271502..9274409DHHC zinc finger domain containing protein, expressed
LOC_Os12g16220Os.17641.1.S1_at10/1112+9275597..9280931Isoflavone reductase homolog, putative, expressed
LOC_Os12g16220Os.48109.1.A1_x_at2/1112+9275597..9280931Isoflavone reductase homolog, putative, expressed
LOC_Os12g16220Os.14533.1.S1_a_at1/1112+9275597..9280931Isoflavone reductase homolog, putative, expressed
LOC_Os12g16220Os.48109.1.A1_s_at1/1112+9275597..9280931Isoflavone reductase homolog, putative, expressed
LOC_Os12g16230NANA12+9282427..9282744hypothetical protein
LOC_Os12g16240Os.48109.1.A1_s_at11/1112+9284103..9286535Isoflavone reductase homolog, putative, expressed
LOC_Os12g16240Os.48109.1.A1_x_at11/1112+9284103..9286535Isoflavone reductase homolog, putative, expressed
LOC_Os12g16240Os.14533.1.S1_a_at3/1112+9284103..9286535Isoflavone reductase homolog, putative, expressed
LOC_Os12g16250NANA12+9288203..9288850Isoflavone reductase homolog, putative, expressed
LOC_Os12g16260OsAffx.31762.1.S1_at11/1112+9295415..9297587hypothetical protein
LOC_Os12g16260Os.48109.1.A1_s_at11/1112+9295415..9297587hypothetical protein
LOC_Os12g16260Os.48109.1.A1_x_at4/1112+9295415..9297587hypothetical protein
LOC_Os12g16270NANA12+9299418..9299704expressed protein
LOC_Os12g16280Os.52396.1.S1_at11/1112+9301941..9308507expressed protein
LOC_Os12g16280OsAffx.19701.1.S1_s_at11/1112+9301941..9308507expressed protein
LOC_Os12g16280OsAffx.19701.1.S1_at5/1112+9301941..9308507expressed protein
LOC_Os12g16280Os.17370.2.S1_x_at4/1112+9301941..9308507expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14533.1.S1_a_at--300--71Chr12:9299226..9299250 (25 bp)
ATTGCTTTGCAGCTAAATTCAGTCC
NONE
Os.14533.1.S1_a_at--163--5051Chr12:9299218..9299242 (25 bp)
GCAGCTAAATTCAGTCCTAACCTCT
NONE
Os.14533.1.S1_a_at--844--10532Chr12:9299209..9299233 (25 bp)
TTCAGTCCTAACCTCTGTCAGATGA
NONE
Os.14533.1.S1_a_at--995--2571Chr12:9299200..9299224 (25 bp)
AACCTCTGTCAGATGAAAACTCACC
NONE
Os.14533.1.S1_a_at--256--9313Chr12:9299175..9299199 (25 bp)
TCCCTCCCAAAGAGAGTTGGTGTGT
NONE
Os.14533.1.S1_a_at--910--6211NONE
GATGGTAACGTCAAAGTGTTTTTTG
NONE
Os.14533.1.S1_a_at--722--6293Chr12:9297674..9297698 (25 bp)
GATGATGTGGGAACATATACAATCA
NONE
Os.14533.1.S1_a_at--560--3071Chr12:9297654..9297678 (25 bp)
AATCAAATCAATCGATGATCCCCGC
NONE
Os.14533.1.S1_a_at--1052--1371Chr12:9297605..9297629 (25 bp)
AGACCACAAGATAACTGCCTCACTT
NONE
Os.14533.1.S1_a_at--651--9191Chr12:9297590..9297614 (25 bp)
TGCCTCACTTAGAACGAGTTGATCG
NONE
Os.14533.1.S1_a_at--884--10431Chr12:9297582..9297606 (25 bp)
TTAGAACGAGTTGATCGCGATGTGG
NONE
Target Sequence 
ATTGCTTTGCAGCTAAATTCAGTCCTAACCTCTGTCAGATGAAAACTCACCNTCCCTCCCAAAGAGAGTTGGTGTGTACG
GGGATGGTAACGTCAAAGTGTTTTTTGTGTATGAAGATGATGTGGGAACATATACAATCAAATCAATCGATGATCCCCGC
ACCTTGAACAAGACAATATACATAAGACCACAAGATAACTGCCTCACTTAGAACGAGTTGATCGCGATGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14533.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis