Browse Element(s) Details


Os.14630.2.S1_at

Description gb:AK121605.1
DB_XREF= gi:37991228
TID=Os.14630.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14630 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023045G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033041O06, full insert sequence.
FL= gb:AK121605.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6756011/11Uncharacterized BCR, COG1963 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67510Os.18205.1.S1_at10/111+39565700..39570792Protein recA, putative, expressed
LOC_Os01g67520Os.49594.1.S1_at11/111+39571459..39573977VTC2, putative, expressed
LOC_Os01g67530Os.5174.1.S1_at11/111+39579852..39583588AMP-binding enzyme family protein, expressed
LOC_Os01g67540OsAffx.21790.1.S1_at11/111+39584856..39588099AMP-binding enzyme family protein, expressed
LOC_Os01g67550Os.54247.1.S1_at6/111+39589761..39593236FAD binding domain containing protein
LOC_Os01g67560Os.14630.1.S1_at11/111+39593630..39596178Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os01g67560Os.14630.2.S1_at11/111+39593630..39596178Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os01g67570Os.14855.1.S1_at11/111+39597394..39601841expressed protein
LOC_Os01g67580Os.33212.2.S1_at11/111+39603067..39609733ABC transporter family protein, expressed
LOC_Os01g67580Os.50194.1.S1_at1/111+39603067..39609733ABC transporter family protein, expressed
LOC_Os01g67590Os.14090.1.S1_a_at11/111+39616212..39623444Peptidase family M3 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14630.2.S1_at--768--1511Chr01:39595179..39595201 (23 bp)
AGCAGCTTATCGGTTCTGGTGGCCA
LOC_Os01g67560
Os.14630.2.S1_at--133--111Chr01:39595141..39595165 (25 bp)
ATTCTGCCACAGTTACAGCACTAGC
LOC_Os01g67560
Os.14630.2.S1_at--211--2031Chr01:39595122..39595146 (25 bp)
ACTAGCTGTAGCGATTGGCTTCCAA
LOC_Os01g67560
Os.14630.2.S1_at--937--2251Chr01:39594369..39594393 (25 bp)
AAATAGTCTGCGAACTTCCTTCTGA
LOC_Os01g67560
Os.14630.2.S1_at--587--3171Chr01:39594294..39594318 (25 bp)
CAACCCAGGTTTGCTCAAATGCCAT
LOC_Os01g67560
Os.14630.2.S1_at--263--6611Chr01:39594219..39594243 (25 bp)
GATTGTGCTGATTACGTGGATACCA
LOC_Os01g67560
Os.14630.2.S1_at--551--8971Chr01:39594192..39594216 (25 bp)
TGAACCACAAACTGGCTGTGCCAAT
LOC_Os01g67560
Os.14630.2.S1_at--67--1811Chr01:39594142..39594166 (25 bp)
ACCCCATGCTTATCAGTTATCGTCA
LOC_Os01g67560
Os.14630.2.S1_at--897--10411Chr01:39594126..39594150 (25 bp)
TTATCGTCACATCATGCAGCTTCGT
LOC_Os01g67560
Os.14630.2.S1_at--651--9651Chr01:39594102..39594126 (25 bp)
TCAGCAGTGCTACCATCTTCTTGTT
LOC_Os01g67560
Os.14630.2.S1_at--549--10551Chr01:39594085..39594109 (25 bp)
TTCTTGTTTCTTTCAGTCATGGCCA
LOC_Os01g67560
Target Sequence 
AGCAGCTTATCGGTTCTGGTGGCCATCGTCACATTCTGCCACAGTTACAGCACTAGCTGTAGCGATTGGCTTCCAAGATG
GTTTTGGCTGTGCCCTATTTGCGACAGCAGCAATATTCGCAAGTGTGGTTATGTACGATGCTTCTGGTATCAGATTACAT
GCTGGAAAGCAAGCAGAGGTGTTGAATCAAATAGTCTGCGAACTTCCTTCTGAACATCCCTTGTCTGAAACAAGACCATT
GCGTGAACTCTTAGGCCATACTCCAACCCAGGTTTGCTCAAATGCCATTTTCACTAATCATTTTATTATACTGCACCAAT
CGAAAGCGATGTCATATTGATTGTGCTGATTACGTGGATACCAACTGAACCACAAACTGGCTGTGCCAATGTCATCAGAT
CCCCTTTTACCTAGCACCCCATGCTTATCAGTTATCGTCACATCATGCAGCTTCGTCAGCAGTGCTACCATCTTCTTGTT
TCTTTCAGTCATGGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14630.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis