Browse Element(s) Details


Os.14640.1.S1_at

Description gb:AK059555.1
DB_XREF= gi:32969573
TID=Os.14640.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14640 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-029-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-G07, full insert sequence.
FL= gb:AK059555.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3713010/11HCF106 precursor protein, putative, expressed
LOC_Os06g012903/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37090Os.54176.1.S1_at11/1111+21391552..21395899Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os11g37100Os.49949.1.S1_at11/1111+21405019..21407820expressed protein
LOC_Os11g37100Os.49949.1.S2_at11/1111+21405019..21407820expressed protein
LOC_Os11g37110OsAffx.19207.1.S1_at10/1111+21408319..21409548hypothetical protein
LOC_Os11g37120OsAffx.19208.1.S1_at11/1111+21411589..21414660Nucleolar protein NOP5, putative
LOC_Os11g37120Os.51660.1.S1_at1/1111+21411589..21414660Nucleolar protein NOP5, putative
LOC_Os11g37130Os.14640.1.S1_at10/1111+21418836..21422022HCF106 precursor protein, putative, expressed
LOC_Os11g37140OsAffx.7328.2.S1_at10/1111+21424543..21426823hypothetical protein
LOC_Os11g37160OsAffx.7320.1.S1_at11/1111+21434605..21435723hypothetical protein
LOC_Os11g37170OsAffx.8201.1.S1_x_at1/1111+21443224..21449697retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0045038biological_processprotein import into chloroplast thylakoid membrane
GO:0009579cellular_componentthylakoid
GO:0009977molecular_functiondelta-pH-dependent transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14640.1.S1_at--339--3012Chr06:183226..183250 (25 bp)
AATGACGGTGCTATATCAAGAGGGA
LOC_Os06g01290
Os.14640.1.S1_at--42--4732Chr06:183259..183283 (25 bp)
GCTGGTGCTGCAATGAGTGAGCCCA
LOC_Os06g01290
Os.14640.1.S1_at--450--6092Chr06:183273..183297 (25 bp)
GAGTGAGCCCAATCGGAACATTTCT
LOC_Os06g01290
Os.14640.1.S1_at--182--5752Chr06:183303..183327 (25 bp)
GACGGAAACCGAGAGATGAAGCATA
NONE
Os.14640.1.S1_at--1134--2011Chr11:21419178..21419202 (25 bp)
ACTACTGTATTAAGACTGACGCAAG
LOC_Os11g37130
Os.14640.1.S1_at--920--6111Chr11:21419074..21419098 (25 bp)
GAGTGATTTGAGGATCTGGTCAGCT
LOC_Os11g37130
Os.14640.1.S1_at--579--7971Chr11:21419063..21419087 (25 bp)
GGATCTGGTCAGCTGTGATGCATAT
LOC_Os11g37130
Os.14640.1.S1_at--226--3691Chr11:21419027..21419051 (25 bp)
CTTTGCTGTGTAGTAGATCGACTGT
LOC_Os11g37130
Os.14640.1.S1_at--807--5711Chr11:21418985..21419009 (25 bp)
GACTGAAAGGTGATCGTCCCTCTCT
LOC_Os11g37130
Os.14640.1.S1_at--477--1751Chr11:21418953..21418977 (25 bp)
ACCTCTTGTTTTGCTATGGATGATA
LOC_Os11g37130
Os.14640.1.S1_at--846--231NONE
ATATTTGCTGATGTGCCGGTCTAAT
NONE
Target Sequence 
AATGACGGTGCTATATCAAGAGGGAGTGATGGTGCTGGTGCTGCAATGAGTGAGCCCAATCGGAACATTTCTGAGAAGAC
GGAAACCGAGAGATGAAGCATAACGATGTAGAGTACTACTGTATTAAGACTGACGCAAGNACACGCTGTGGAGGTTGGAA
AGAGCGGATTATGATTTTTAATTTGGTGAGCTGGGTATGCCTGGGTTTGGGTAGGGAGGAGTGATTTGAGGATCTGGTCA
GCTGTGATGCATATGTGTAGTGTTGCTTTGCTGTGTAGTAGATCGACTGTAATAGAATGGACGGACAGACTGAAAGGTGA
TCGTCCCTCTCTTCCTCCGACCTCTTGTTTTGCTATGGATGATANTAGAGCGAGATTGTACGGTNCACGATGGATAGCNA
GCTGGGACCAATGCGTAANTANTTTAATTANCTNNAAGNNCGGGGACTTNTTTAAAATATTTGCTGATGTGCCGGTCTAA
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14640.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis