Browse Element(s) Details


Os.14656.1.S1_at

Description gb:AK064839.1
DB_XREF= gi:32974857
TID=Os.14656.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14656 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ubiquitin-conjugating enzyme (OSJNBb0038H12.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000F24, full insert sequence.
FL= gb:AK064839.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1126011/11Ubiquitin-conjugating enzyme E2 M, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g11210NANA10+5983580..5986912transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11220Os.46053.2.S1_x_at11/1110+5988115..5991347transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11230Os.47463.1.S1_x_at5/1110+5993282..5996982transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11230Os.14491.2.S1_x_at4/1110+5993282..5996982transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11240OsAffx.20647.1.S1_at11/1110+5998784..6001847hypothetical protein
LOC_Os10g11250OsAffx.8398.1.S1_at11/1110+6002618..6007189transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11260Os.14656.2.S1_at11/1110+6009693..6015999Ubiquitin-conjugating enzyme E2 M, putative, expressed
LOC_Os10g11260Os.14656.2.S1_x_at11/1110+6009693..6015999Ubiquitin-conjugating enzyme E2 M, putative, expressed
LOC_Os10g11260Os.14656.1.S1_at11/1110+6009693..6015999Ubiquitin-conjugating enzyme E2 M, putative, expressed
LOC_Os10g11270Os.46538.1.S1_at11/1110+6017219..6019621Sulfotransferase domain containing protein, expressed
LOC_Os10g11270Os.38273.1.S1_at1/1110+6017219..6019621Sulfotransferase domain containing protein, expressed
LOC_Os10g11280OsAffx.8397.1.S1_at11/1110+6023789..6028093retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g11290NANA10+6030061..6031547retrotransposon protein, putative, unclassified
LOC_Os10g11310Os.46498.1.S1_at11/1110+6037808..6041839expressed protein
LOC_Os10g11310Os.46498.2.S1_x_at7/1110+6037808..6041839expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009733biological_processresponse to auxin stimulus
GO:0009790biological_processembryonic development
GO:0004840molecular_functionubiquitin conjugating enzyme activity
GO:0008640molecular_functionubiquitin-like conjugating enzyme activity
GO:0016976molecular_functionNEDD8 conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14656.1.S1_at--294--5231Chr10:6015485..6015509 (25 bp)
GAATACCAGTCTTTTGACATCCCAC
LOC_Os10g11260
Os.14656.1.S1_at--223--2931Chr10:6015541..6015565 (25 bp)
AAGGCAAAGGCGAATCTTCTGCAAA
LOC_Os10g11260
Os.14656.1.S1_at--341--1911Chr10:6015572..6015596 (25 bp)
ACGTGCTGAAGTCCACAAGTCTTGT
LOC_Os10g11260
Os.14656.1.S1_at--1050--7591Chr10:6015605..6015629 (25 bp)
GGGAATCGCGTAAATTCACGTTCGA
LOC_Os10g11260
Os.14656.1.S1_at--532--551Chr10:6015664..6015688 (25 bp)
ATCCGACGGCGCAATTTCCTGTGTG
LOC_Os10g11260
Os.14656.1.S1_at--136--7691Chr10:6015719..6015743 (25 bp)
GGGTATAACATCTCACCGTGATCGC
LOC_Os10g11260
Os.14656.1.S1_at--209--3391Chr10:6015759..6015783 (25 bp)
CAGCCCGCAGCTGCTTAAAGTAACT
LOC_Os10g11260
Os.14656.1.S1_at--812--7551Chr10:6015783..6015807 (25 bp)
TGGGCCGAACCGAACCGTTGGACAT
LOC_Os10g11260
Os.14656.1.S1_at--974--7851Chr10:6015822..6015846 (25 bp)
GGTATTTTTATTCTCTTCAGCCTAT
LOC_Os10g11260
Os.14656.1.S1_at--888--9511Chr10:6015833..6015857 (25 bp)
TCTCTTCAGCCTATGTTAGCTACAT
LOC_Os10g11260
Os.14656.1.S1_at--990--7732Chr10:6015957..6015981 (25 bp)
GGTGGTGATGGTTCTGCCACCAATC
LOC_Os10g11260
Target Sequence 
GAATACCAGTCTTTTGACATCCCACGAAAAATTTGGATCATAAGGATTGAGTTACAAAGGCAAAGGCGAATCTTCTGCAA
AAGTTAAACGTGCTGAAGTCCACAAGTCTTGTGTGGCAAGGGGAATCGCGTAAATTCACGTTCGAGGGACGTGGTTCGTT
GCGTCGCCGTCGCTTCCTCATCCGACGGCGCAATTTCCTGTGTGCGCGCGTTGTTTGTTGGGGGTGGCCGGGTGGGGTAT
AACATCTCACCGTGATCGCCTCCGTTGCCGACTACAGCCCGCAGCTGCTTAAAGTAACTGGGCCGAACCGAACCGTTGGA
CATCTCGTTTTTTATTTGGTATTTTTATTCTCTTCAGCCTATGTTAGCTACATTTTTATTGAGAATTGAGCCAATTATTT
TGTAATAAGTAGTTATTATAGCTCTTTAAAGCAAAAACCGAACATGTATACTATTGACTAAATAACAATAACGGTGGTGA
TGGTTCTGCCACCAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14656.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis