Browse Element(s) Details


Os.14754.1.A1_s_at

Description gb:CA762673
DB_XREF= gi:25806712
DB_XREF=BR060007B20A04.ab1
CLONE=BR060007B20A04.ab1
TID=Os.14754.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.14754 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_568577.1 (A.thaliana) DegP protease (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5088011/11DegP protease, putative, expressed
LOC_Os11g142701/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50840Os.16883.1.S1_a_at11/112+31058195..31065395BAH domain containing protein, expressed
LOC_Os02g50840Os.15456.2.S1_x_at6/112+31058195..31065395BAH domain containing protein, expressed
LOC_Os02g50850Os.8858.1.S1_a_at11/112+31072266..31078068BAH domain containing protein, expressed
LOC_Os02g50860Os.5505.1.S1_at10/112+31078584..31082315RAC-like GTP binding protein ARAC10, putative, expressed
LOC_Os02g50870OsAffx.3030.1.S1_at11/112+31083439..31087772hypothetical protein
LOC_Os02g50880OsAffx.24819.1.S1_at11/112+31090304..31095320DegP protease, putative, expressed
LOC_Os02g50880Os.14754.2.S1_s_at11/112+31090304..31095320DegP protease, putative, expressed
LOC_Os02g50880Os.14754.1.A1_s_at11/112+31090304..31095320DegP protease, putative, expressed
LOC_Os02g50890OsAffx.12581.1.S1_at11/112+31100358..31101563hypothetical protein
LOC_Os02g50900OsAffx.3031.1.S1_at11/112+31105977..31108488expressed protein
LOC_Os02g50910Os.49492.1.S1_at10/112+31114780..31118150chromosome-associated kinesin, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0010206biological_processphotosystem II repair
GO:0009533cellular_componentchloroplast stromal thylakoid
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0004252molecular_functionserine-type endopeptidase activity
GO:0004295molecular_functiontrypsin activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14754.1.A1_s_at--979--672Chr11:7989596..7989657 (24 bp)
ATGACCAGATTGTTGTCCTTGAGAC
LOC_Os11g14270
Os.14754.1.A1_s_at--580--8331Chr02:31090799..31090823 (25 bp)
GGCTGCGACACAGGACATTCTGACA
LOC_Os02g50880
Os.14754.1.A1_s_at--1039--2211Chr02:31090724..31090748 (25 bp)
ACAAGATGCGGCCTTCGGCTATTTG
LOC_Os02g50880
Os.14754.1.A1_s_at--243--4271Chr02:31090694..31090718 (25 bp)
CCTGCTTGGGCCACATTTTTGATTG
LOC_Os02g50880
Os.14754.1.A1_s_at--438--10791Chr02:31090667..31090691 (25 bp)
TTGATTAGCATCAGCCCGCGAGAAG
LOC_Os02g50880
Os.14754.1.A1_s_at--128--5431Chr02:31090646..31090670 (25 bp)
GAAGCCTCAGCTTACGAATTGAAAG
LOC_Os02g50880
Os.14754.1.A1_s_at--96--3151Chr02:31090630..31090654 (25 bp)
AATTGAAAGCCCTCCAGACGTTCTG
LOC_Os02g50880
Os.14754.1.A1_s_at--846--8811Chr02:31090592..31090616 (25 bp)
TGTTGGCGTCCAGCTTCACCAAAAA
LOC_Os02g50880
Os.14754.1.A1_s_at--635--2591Chr02:31090553..31090577 (25 bp)
AACGAGCGTCACATCACTATTAGGT
LOC_Os02g50880
Os.14754.1.A1_s_at--579--8031Chr02:31090528..31090552 (25 bp)
GGAGTTGTTACTAGCGACGAGTCAT
LOC_Os02g50880
Os.14754.1.A1_s_at--532--6431Chr02:31090434..31090458 (25 bp)
GATCATACTTCATATTTTGGCCAAA
LOC_Os02g50880
Target Sequence 
ATGACCAGATTGTTGTCCTTGAGACAAAAACTGCGAAGGCTGCGACACAGGACATTCTGACAACACACNTGTATACCNNN
GTCGGCAATGTCTGATGACCTGAAGACCTAATGGGGACAAGATGCGGCCTTCGGCTATTTGGTGGCCCTGCTTGGGCCAC
ATTTTTGATTGGGTTGATTAGCATCAGCCCGCGAGAAGCCTCAGCTTACGAATTGAAAGCCCTCCAGACGTTCTGGACGG
CAAAGTGCTGTTGGCGTCCAGCTTCACCAAAAAGAAGGCTCCGAGTAAACGAGCGTCACATCACTATTAGGTGGAGTTGT
TACTAGCGACGAGTCATCGTGAAAGCGATAGTGGTTACAATAAACAAGATTCTATTTCATTACATTACATTAAATTAGTG
AGCTGAGATCATACTTCATATTTTGGCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14754.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis