Browse Element(s) Details


Os.14769.1.S1_at

Description gb:AK063558.1
DB_XREF= gi:32973576
TID=Os.14769.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14769 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-117-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-E12, full insert sequence.
FL= gb:AK063558.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5401011/11lipase class 3 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53990Os.50421.1.S1_at11/112+33048306..33060760cyclin, putative, expressed
LOC_Os02g53990Os.4183.1.S1_a_at2/112+33048306..33060760cyclin, putative, expressed
LOC_Os02g54000Os.10219.1.S1_at11/112+33067266..33071309mRNA capping enzyme family protein, putative, expressed
LOC_Os02g54000Os.50124.1.S1_at1/112+33067266..33071309mRNA capping enzyme family protein, putative, expressed
LOC_Os02g54010Os.14769.1.S1_at11/112+33072442..33077687lipase class 3 family protein, putative, expressed
LOC_Os02g54020OsAffx.24860.1.S1_at11/112+33078576..33087384ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os02g54020OsAffx.3060.1.S1_at11/112+33078576..33087384ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os02g54020Os.50833.1.S1_at1/112+33078576..33087384ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os02g54030Os.25444.1.S1_at11/112+33091467..33092941Polygalacturonase family protein, expressed
LOC_Os02g54030OsAffx.3061.1.S1_x_at9/112+33091467..33092941Polygalacturonase family protein, expressed
LOC_Os02g54040OsAffx.24861.1.S1_at11/112+33096757..33097035hypothetical protein
LOC_Os02g54050OsAffx.12633.1.S1_at11/112+33101876..33102544AP2 domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14769.1.S1_at--922--4951Chr02:33077130..33077154 (25 bp)
GCATATATTAACTTCCACCATAGAG
LOC_Os02g54010
Os.14769.1.S1_at--919--9371Chr02:33077176..33077200 (25 bp)
TCGAGCGTGCCTCATGAAGATGACA
LOC_Os02g54010
Os.14769.1.S1_at--345--5231Chr02:33077222..33077246 (25 bp)
GAATAGGCATCTTCTTGACCCCAAG
LOC_Os02g54010
Os.14769.1.S1_at--367--10771Chr02:33077321..33077345 (25 bp)
TTGAGCAGTTGATCGCTGAGCTTGA
LOC_Os02g54010
Os.14769.1.S1_at--604--5311Chr02:33077346..33077370 (25 bp)
GAAGGATTCGTCATTCCCAGTCAGT
LOC_Os02g54010
Os.14769.1.S1_at--1037--731Chr02:33077414..33077438 (25 bp)
ATGTAGTTCCAGCTGTTGTAAACGC
LOC_Os02g54010
Os.14769.1.S1_at--514--1111Chr02:33077466..33077490 (25 bp)
AGTGTATCTAACATCCTCTGGAATA
LOC_Os02g54010
Os.14769.1.S1_at--1073--5191Chr02:33077497..33077521 (25 bp)
GAATTCTCAGGTCCCTAATCACAAG
LOC_Os02g54010
Os.14769.1.S1_at--1148--2911Chr02:33077519..33077543 (25 bp)
AAGGCACCACAAACGTTGCCCTATT
LOC_Os02g54010
Os.14769.1.S1_at--794--4031Chr02:33077532..33077556 (25 bp)
CGTTGCCCTATTTCTTACAAACTCA
LOC_Os02g54010
Os.14769.1.S1_at--1125--3191Chr02:33077555..33077579 (25 bp)
CAAGGACCATTTCTGTTACGCAAAG
LOC_Os02g54010
Target Sequence 
GCATATATTAACTTCCACCATAGAGGAAACAGTCANTGNCCGAAGANTCGAGCGTGCCTCATGAAGATGACACGACCGGT
GATTCNGGACACCANGAATAGGCATCTTCTTGACCCCAAGGTCATTATNATGGCAAANCTGAGGCTTTCAAAANNGATGA
TTAACGATNCATNTACATGCCTATATNATAGAAGAAATATTGAGCAGTTGATCGCTGAGCTTGAGAAGGATTCGTCATTC
CCAGTCAGTGATTGTCTTGACAGTGAAGTTNCCCTNAGTTTGACACATACATATATGTAGTTCCAGCTGTTGTAAACGCT
GATGCAATAGAATGATAGTTTCGTTAAGTGTATCTAACATCCTCTGGAATAATTACAGAATTCTCAGGTCCCTAATCACA
AGGCACCACAAACGTTGCCCTATTTCTTACAAACTCAAGGACCATTTCTGTTACGCAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14769.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis