Browse Element(s) Details


Os.14775.1.S1_at

Description gb:AK071608.1
DB_XREF= gi:32981631
TID=Os.14775.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14775 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0035F12.4 (P0035F12.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023104H08, full insert sequence.
FL= gb:AK071608.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6742011/11lipase class 3 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67370Os.9896.1.S1_at10/111+39456586..39461707pentatricopeptide, putative, expressed
LOC_Os01g67370Os.51993.1.S1_at8/111+39456586..39461707pentatricopeptide, putative, expressed
LOC_Os01g67380OsAffx.23955.1.S1_at11/111+39463210..39463710hypothetical protein
LOC_Os01g67390Os.28994.1.S1_at11/111+39463786..39466229Pollen proteins Ole e I family protein, expressed
LOC_Os01g67400OsAffx.23956.1.S1_at10/111+39467293..39467611hypothetical protein
LOC_Os01g67410OsAffx.23957.1.S1_x_at11/111+39468416..39472091AP2 domain containing protein
LOC_Os01g67410OsAffx.23957.1.S1_at11/111+39468416..39472091AP2 domain containing protein
LOC_Os01g67420Os.14775.1.S1_at11/111+39485002..39492578lipase class 3 family protein, putative, expressed
LOC_Os01g67430OsAffx.12450.1.S1_x_at11/111+39504018..39505325lipase class 3 family protein, putative
LOC_Os01g67440NANA1+39506618..39506914transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14775.1.S1_at--32--10431Chr01:39491701..39491725 (25 bp)
TTATGGACCTTGTTGTTACACCTCG
LOC_Os01g67420
Os.14775.1.S1_at--178--10491Chr01:39491716..39491740 (25 bp)
TTACACCTCGTATGTTCCTTGATCA
LOC_Os01g67420
Os.14775.1.S1_at--196--3631Chr01:39491733..39491754 (22 bp)
CTTGATCATCTTCCATGGAGGTGCC
LOC_Os01g67420
Os.14775.1.S1_at--97--6771Chr01:39492150..39492174 (25 bp)
GTTAATTTTGCAACTCTCCTTAATT
LOC_Os01g67420
Os.14775.1.S1_at--1115--731Chr01:39492193..39492217 (25 bp)
ATGTTAGGATCATCTGCTTCTTGCA
LOC_Os01g67420
Os.14775.1.S1_at--1035--5511Chr01:39492301..39492325 (25 bp)
GAAAAACATCACTTGGACCTTAGCA
LOC_Os01g67420
Os.14775.1.S1_at--1009--8091Chr01:39492315..39492339 (25 bp)
GGACCTTAGCATTTGTTGTACTAGG
LOC_Os01g67420
Os.14775.1.S1_at--309--4891Chr01:39492348..39492372 (25 bp)
GCTTTACATAGGCTTGCTCTGAGGT
LOC_Os01g67420
Os.14775.1.S1_at--1018--1171Chr01:39492376..39492400 (25 bp)
AGTAGAGTACAGCATGCCACTATTA
LOC_Os01g67420
Os.14775.1.S1_at--694--6631Chr01:39492462..39492486 (25 bp)
GTTGTTGTAACTCTAGTGTTCACAC
LOC_Os01g67420
Os.14775.1.S1_at--137--9631Chr01:39492510..39492534 (25 bp)
TCATGTACCATGTACTCCTACTTGC
LOC_Os01g67420
Target Sequence 
TTATGGACCTTGTTGTTACACCTCGTATGTTCCTTGATCATCTTCCATGGAGGTGCCNCTATGCCATGCAAAGGGTTATA
GAAACTCGGAAAAGGGCATGCTAATTCATGATTCGNTCNACCAGAGATGATACTGTGTGAAGTTAATTTTGCAACTCTCC
TTAATTCTTGTAGATAAGTTCAGGATGTTAGGATCATCTGCTTCTTGCANGGAGGTTGGCTGCATATACNGTGTTGACTG
TATTACTGTAACTGTAAGTAGAACAGTTCAGAGCTGAAGGGTGTTGCCAATGTGAAAAACATCACTTGGACCTTAGCATT
TGTTGTACTAGGAGTATCTAGCTTTACATAGGCTTGCTCTGAGGTCNAAGTAGAGTACAGCATGCCACTATTATTTATGA
AACCTTTGGTAGTGAGTAATTATATTAGTCTGTAGCATCAAATTTTGCTGCAATGTTGTTGTAACTCTAGTGTTCACACA
NTTACATGTAATTGTCTGAACAATCATGTACCATGTACTCCTACTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14775.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis