Browse Element(s) Details


Os.14894.1.A1_at

Description gb:BI806169
DB_XREF= gi:15853373
DB_XREF=S058F06
CLONE=S058F06
TID=Os.14894.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.14894 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_192882.1 (A.thaliana) putative proline-rich protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g195601/11Protein arginine N-methyltransferase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19520Os.24942.4.A1_x_at6/119+11679927..11680334hypothetical protein
LOC_Os09g19520Os.24942.4.A1_at2/119+11679927..11680334hypothetical protein
LOC_Os09g19530NANA9+11682894..11689049transposon protein, putative, unclassified
LOC_Os09g19540NANA9+11689688..11692924transposon protein, putative, unclassified
LOC_Os09g19550OsAffx.29925.1.S1_at11/119+11699471..11701661SNARE domain containing protein
LOC_Os09g19560Os.18453.1.S1_at11/119+11701894..11705346Protein arginine N-methyltransferase 1, putative, expressed
LOC_Os09g19560Os.14894.1.A1_at1/119+11701894..11705346Protein arginine N-methyltransferase 1, putative, expressed
LOC_Os09g19570Os.54527.1.S1_at11/119+11706234..11709471expressed protein
LOC_Os09g19570Os.18476.1.S1_at1/119+11706234..11709471expressed protein
LOC_Os09g19580OsAffx.20733.1.A1_x_at1/119+11713232..11714215retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g19580Os.45173.3.S1_x_at1/119+11713232..11714215retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g19590NANA9+11716007..11717189hypothetical protein
LOC_Os09g19600OsAffx.21897.5.S1_x_at3/119+11718719..11721661retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g19610OsAffx.20387.1.S1_x_at1/119+11723396..11726173retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g19620NANA9+11726504..11728083retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g19630OsAffx.31069.1.S1_x_at1/119+11729926..11732076retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0008168molecular_functionmethyltransferase activity
GO:0016274molecular_functionprotein-arginine N-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14894.1.A1_at--620--10811Chr12:19610367..19610391 (25 bp)
TTGTCTTGCTCGCTAAGCTCGGCTC
NONE
Os.14894.1.A1_at--1087--3731Chr12:19610355..19610379 (25 bp)
CTAAGCTCGGCTCGACGCATCTGGA
NONE
Os.14894.1.A1_at--222--2431Chr12:19609861..19609882 (22 bp)
AAAACCTAGCAGAATGGCATTACAG
NONE
Os.14894.1.A1_at--519--5291Chr12:19609850..19609874 (25 bp)
GAATGGCATTACAGTTTGCGACAAA
NONE
Os.14894.1.A1_at--981--6271Chr12:19609822..19609846 (25 bp)
GATGTACAGTTCAGTTGAGCACCAA
NONE
Os.14894.1.A1_at--608--9471Chr12:19609755..19609779 (25 bp)
TCTGCGGAAATTACAAACAATGCCA
NONE
Os.14894.1.A1_at--515--3071Chr12:19609730..19609754 (25 bp)
AATCATGTCATCTAAAAATTGGCAC
NONE
Os.14894.1.A1_at--1072--2231Chr12:19609715..19609739 (25 bp)
AAATTGGCACATTCCATTTTTGCAT
NONE
Os.14894.1.A1_at--581--4992Chr12:19609694..19609718 (25 bp)
GCATGTTGTAGTTTCCTTGTTGGAC
NONE
Os.14894.1.A1_at--11--10671Chr12:19609682..19609706 (25 bp)
TTCCTTGTTGGACATGAGTTTAAAC
NONE
Os.14894.1.A1_at--523--10832Chr12:19608522..19608546 (25 bp)
TTGGTAAGCCATGATATCTTCACTG
NONE
Target Sequence 
TTGTCTTGCTCGCTAAGCTCGGCTCGACGCATCTGGATAGTTTTGAGACACGAATTTGCTTATGTGGATGCGCCAACCAA
CCAGATCTTGAAGGACCTGAAGTCCCAAATATTATTACCACGGGTGTGCTATGCCAAATCATTCTAAACAAAAAACCTAG
CAGAATGGCATTACAGTTTGCGACAAAAGGGATGTACAGTTCAGTTGAGCACCAAGATTGATCGTAGAATTGACAACATT
TGATGTATGTATATATATCTGCGGAAATTACAAACAATGCCAAATCATGTCATCTAAAAATTGGCACATTCCATTTTTGC
ATGTTGTAGTTTCCTTGTTGGACATGAGTTTAAACAAAGGTTTAGTCTTGGNCCTTGGATCCAAGCAATGCTTGGTAAGC
CATGATATCTTCACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14894.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis