Browse Element(s) Details


OsAffx.29925.1.S1_at

Description tigr:9637.m01649
TID=OsAffx.29925.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=syntaxin 71 (atsyp71). (mouse-ear cress, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1955011/11SNARE domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19510Os.53875.1.S1_at7/119+11670312..11675422Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative, expressed
LOC_Os09g19520Os.24942.4.A1_x_at6/119+11679927..11680334hypothetical protein
LOC_Os09g19520Os.24942.4.A1_at2/119+11679927..11680334hypothetical protein
LOC_Os09g19530NANA9+11682894..11689049transposon protein, putative, unclassified
LOC_Os09g19540NANA9+11689688..11692924transposon protein, putative, unclassified
LOC_Os09g19550OsAffx.29925.1.S1_at11/119+11699471..11701661SNARE domain containing protein
LOC_Os09g19560Os.18453.1.S1_at11/119+11701894..11705346Protein arginine N-methyltransferase 1, putative, expressed
LOC_Os09g19560Os.14894.1.A1_at1/119+11701894..11705346Protein arginine N-methyltransferase 1, putative, expressed
LOC_Os09g19570Os.54527.1.S1_at11/119+11706234..11709471expressed protein
LOC_Os09g19570Os.18476.1.S1_at1/119+11706234..11709471expressed protein
LOC_Os09g19580OsAffx.20733.1.A1_x_at1/119+11713232..11714215retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g19580Os.45173.3.S1_x_at1/119+11713232..11714215retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g19590NANA9+11716007..11717189hypothetical protein
LOC_Os09g19600OsAffx.21897.5.S1_x_at3/119+11718719..11721661retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g19610OsAffx.20387.1.S1_x_at1/119+11723396..11726173retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g19620NANA9+11726504..11728083retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0045045biological_processsecretory pathway
GO:0016021cellular_componentintegral to membrane
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29925.1.S1_at--592--971Chr09:11699789..11699813 (25 bp)
AGGAGGTCGTCAAGCTCCGGAAGCT
LOC_Os09g19550
OsAffx.29925.1.S1_at--76--10851Chr09:11700024..11700048 (25 bp)
TTGGCATTGCCGCATAGGATCCAGT
LOC_Os09g19550
OsAffx.29925.1.S1_at--289--7671Chr09:11700108..11700132 (25 bp)
GGGATCAAGTTCGATTCTTCAGGTT
LOC_Os09g19550
OsAffx.29925.1.S1_at--224--5331Chr09:11700594..11700618 (25 bp)
GAAGGGCTGGAGTTCATCTCTGAAG
LOC_Os09g19550
OsAffx.29925.1.S1_at--1007--6851Chr09:11700619..11700643 (25 bp)
GTTTGGACACACTGAAAAGCCTGGC
LOC_Os09g19550
OsAffx.29925.1.S1_at--1000--5531Chr09:11701302..11701419 (25 bp)
GAAACGGTCAACCAGTTTCGATCGA
LOC_Os09g19550
OsAffx.29925.1.S1_at--34--6851Chr09:11701409..11701433 (25 bp)
GTTTCGATCGACCAGGAACTTCATG
LOC_Os09g19550
OsAffx.29925.1.S1_at--699--431Chr09:11701443..11701467 (25 bp)
ATCTTGATTTGCATCATTCTTGGCA
LOC_Os09g19550
OsAffx.29925.1.S1_at--769--9191Chr09:11701472..11701583 (25 bp)
TGCCTACCTCTACGAGCAACATACT
LOC_Os09g19550
OsAffx.29925.1.S1_at--958--3191Chr09:11701588..11701612 (25 bp)
CAATGAATCTCACTGGTTCCGTCAT
LOC_Os09g19550
OsAffx.29925.1.S1_at--67--6711Chr09:11701603..11701627 (25 bp)
GTTCCGTCATCACCTGTTCAGGAAT
LOC_Os09g19550
Target Sequence 
AGGAGGTCGTCAAGCTCCGGAAGCTCGCCGCCAAGAAGGTGAAAGGGCTCTCGCCGGAGGAGGCGCTGCGGGGCGACCTG
GTCTTGGCATTGCCGCATAGGATCCAGTCCATCCCTGACGGCGGCGGTGGCGCGGCGGATCAGTACGGCGGCGGGAATGT
CCGGCCGGGGATCAAGTTCGATTCTTCAGGTTTTGTTGTTTTCCTTAAGTTGGATGAAGGGCTGGAGTTCATCTCTGAAG
GTTTGGACACACTGAAAAGCCTGGCAGAGGACATGAACGAGGAACTGAACAGGCAGATGCCTATGATGGATGAGATTGAC
AACAAGGTGGATAAATCTAATGAAGACCTCAGAAAGACTAATGTCAGGCTAAAAGAAACGGTCAACCAGTTTCGATCGAC
CAGGAACTTCATGATTGATCTTATCTTGATTTGCATCATTCTTGGCATTGCTGCCTACCTCTACGAGCAACATACTCAAT
CAATGAATCTCACTGGTTCCGTCATCACCTGTTCAGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29925.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis