Browse Element(s) Details


Os.14979.1.S2_at

Description gb:AK069196.1
DB_XREF= gi:32979220
TID=Os.14979.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14979 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023003G18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003G18, full insert sequence.
FL= gb:AK058615.1 gb:AK061688.1 gb:AK069196.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5934011/11Cellulose synthase A catalytic subunit 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59290OsAffx.18938.2.S1_at10/113+33694301..33698230Cyclopropane-fatty-acyl-phospholipid synthase family protein, expressed
LOC_Os03g59300Os.4980.1.S1_at11/113+33704394..33706711expressed protein
LOC_Os03g59310Os.11049.1.S1_at11/113+33707952..3370985640S ribosomal protein S2, putative, expressed
LOC_Os03g59320Os.10146.1.S1_at11/113+33710690..33712549expressed protein
LOC_Os03g59330OsAffx.25765.1.S1_at11/113+33716444..33719478Polygalacturonase family protein, expressed
LOC_Os03g59340Os.14979.1.S1_at11/113+33718947..33725306Cellulose synthase A catalytic subunit 3, putative, expressed
LOC_Os03g59340Os.14979.1.S2_at11/113+33718947..33725306Cellulose synthase A catalytic subunit 3, putative, expressed
LOC_Os03g59350OsAffx.13550.1.S1_s_at11/113+33726843..33728494UDP-glucose:flavonoid-O-glucosyltransferase, putative, expressed
LOC_Os03g59360Os.10572.1.S1_at11/113+33729890..33731707Remorin, C-terminal region family protein, expressed
LOC_Os03g59370OsAffx.25766.1.S1_at11/113+33735723..33736800Ubiquitin family protein
LOC_Os03g59380OsAffx.25767.1.S1_s_at10/113+33737883..33738699Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g59390Os.5004.1.S1_at10/113+33744763..33749033Calcium-dependent protein kinase, isoform AK1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0009833biological_processprimary cell wall biosynthesis (sensu Magnoliophyta)
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0030244biological_processcellulose biosynthesis
GO:0005886cellular_componentplasma membrane
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14979.1.S2_at--405--3031Chr03:33719515..33719539 (25 bp)
AATGCCTGACAACATTCTGCTGCAC
LOC_Os03g59340
Os.14979.1.S2_at--270--1691Chr03:33719405..33719429 (25 bp)
AGCCTTGTAGGCACACTGCATTGCA
LOC_Os03g59340
Os.14979.1.S2_at--515--4991Chr03:33719383..33719407 (25 bp)
GCAGGTTCCTGGTAGAAACCCCAAT
LOC_Os03g59340
Os.14979.1.S2_at--903--1231Chr03:33719268..33719292 (25 bp)
AGTTCCTCCTAATTTGTGCTGGTGC
LOC_Os03g59340
Os.14979.1.S2_at--107--1271Chr03:33719221..33719245 (25 bp)
AGATTTCCTCCATTTTGCATTCTGG
LOC_Os03g59340
Os.14979.1.S2_at--457--111Chr03:33719203..33719227 (25 bp)
ATTCTGGCAAGTACTTCCTGTGGCA
LOC_Os03g59340
Os.14979.1.S2_at--425--10791Chr03:33719175..33719199 (25 bp)
TTGTCATCCACCATTTCCAGGTTGA
LOC_Os03g59340
Os.14979.1.S2_at--357--3511Chr03:33719127..33719151 (25 bp)
CATGGGTAGTTCTTGCTGCAGTTCA
LOC_Os03g59340
Os.14979.1.S2_at--690--6631Chr03:33719079..33719103 (25 bp)
GTTGTCCCTGCGATGTTCTTGAAGA
LOC_Os03g59340
Os.14979.1.S2_at--195--5372Chr07:5828223..5828242 (20 bp)
GAAGACCACATTGCTAATCTCCACT
NONE
Os.14979.1.S2_at--1030--6371Chr03:33719031..33719055 (25 bp)
GATCCCTGAGATCCATGTTCATGGC
LOC_Os03g59340
Target Sequence 
AATGCCTGACAACATTCTGCTGCACTTAATGGGAATATGAAATCAATGTTGCTCTGTATGAAAGAATTTACATGTATATA
ACTTGAATCAATTTAACAAATACACTCTGTAGCCTTGTAGGCACACTGCATTGCAGGTTCCTGGTAGAAACCCCAATGAG
TGTATGCACAATGTATGCATAAATATGACTGATTCCTTCTGAATTTTTTTATACACACTTTATACAGTAATGAACTTTAT
CAGGCCCAGTTCCTCCTAATTTGTGCTGGTGCATGGTTGTGGAACAACTGTTCCAGATTTCCTCCATTTTGCATTCTGGC
AAGTACTTCCTGTGGCACCATTGTCATCCACCATTTCCAGGTTGATGTCCTGTAAGGAAATGTCATAGCATGGGTAGTTC
TTGCTGCAGTTCAGAGTGATGGCACTCTTGGAAATTGTTGTCCCTGCGATGTTCTTGAAGACCACATTGCTAATCTCCAC
TGCTGATCCCTGAGATCCATGTTCATGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14979.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis