Browse Element(s) Details


Os.14996.2.S1_a_at

Description gb:AK059306.1
DB_XREF= gi:32969324
TID=Os.14996.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.14996 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023039L05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-025-G01, full insert sequence.
FL= gb:AK059306.1 gb:AK099122.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4243011/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42399OsAffx.19542.3.S1_x_at3/114+24863702..24870238retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g42420Os.8504.1.S1_at10/114+24883223..24888558nodulin, putative, expressed
LOC_Os04g42430Os.14996.2.S1_a_at11/114+24891950..24896092EF hand family protein, expressed
LOC_Os04g42444Os.54519.1.S1_at11/114+24899143..24903598expressed protein
LOC_Os04g42444Os.52102.1.A1_at11/114+24899143..24903598expressed protein
LOC_Os04g42444OsAffx.14242.1.S1_s_at11/114+24899143..24903598expressed protein
LOC_Os04g42444OsAffx.14242.1.S1_at7/114+24899143..24903598expressed protein
LOC_Os04g42460OsAffx.26442.3.S1_x_at11/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42460OsAffx.26442.3.S1_at11/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42460OsAffx.26442.1.S1_x_at3/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42460OsAffx.26442.2.S1_x_at2/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42470Os.4671.2.S1_a_at11/114+24907660..24915263F-box protein FBL2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14996.2.S1_a_at--679--2311Chr04:24895080..24895104 (25 bp)
AAAGGAGTGCGCATCACCTTCGAGG
LOC_Os04g42430
Os.14996.2.S1_a_at--918--3031Chr04:24895208..24895232 (25 bp)
AATCCTTTGCTGATTTGCGACGAAG
LOC_Os04g42430
Os.14996.2.S1_a_at--1--4631Chr04:24895246..24895270 (25 bp)
GCGATGGCTATCTTTACTTATGGGA
LOC_Os04g42430
Os.14996.2.S1_a_at--566--1531Chr04:24895292..24895316 (25 bp)
AGCAGGATCTCAAGCGTGCAGCGCA
LOC_Os04g42430
Os.14996.2.S1_a_at--826--7331Chr04:24895307..24895550 (25 bp)
GTGCAGCGCACCATGTTTGTGGTGT
LOC_Os04g42430
Os.14996.2.S1_a_at--347--3431Chr04:24895563..24895587 (25 bp)
CAGAGTAGTTGACATCATTTTCCAT
LOC_Os04g42430
Os.14996.2.S1_a_at--253--771Chr04:24895607..24895631 (25 bp)
ATGGGAACTTGAGCTCGGAGGAATT
LOC_Os04g42430
Os.14996.2.S1_a_at--897--2371Chr04:24895655..24895679 (25 bp)
AAACTGATGTTCGTCAGCCAGCGAC
LOC_Os04g42430
Os.14996.2.S1_a_at--743--8791Chr04:24895726..24895750 (25 bp)
TGTTCTTCGCTTACACAGATGCTGC
LOC_Os04g42430
Os.14996.2.S1_a_at--393--1291Chr04:24895890..24895914 (25 bp)
AGATGCCGAAGCGATTTTGCTGTAA
LOC_Os04g42430
Os.14996.2.S1_a_at--626--171Chr04:24895964..24895988 (25 bp)
ATTTTATAGCGCCTTTCTTGCAGGG
LOC_Os04g42430
Target Sequence 
AAAGGAGTGCGCATCACCTTCGAGGAGTTTAAATCCTTTGCTGATTTGCGACGAAGATTGGAGCCACTGGCGATGGCTAT
CTTTACTTATGGGAAAGTAAATGGGCTGTTGACAAAGCAGGATCTCAAGCGTGCAGCGCACCATGTTTGTGGTGTTGACT
TAACTGACAGAGTAGTTGACATCATTTTCCATGTGTTTGATACAAATCATGATGGGAACTTGAGCTCGGAGGAATTTGTG
AGAGCATTACAAAGACGAGAAACTGATGTTCGTCAGCCAGCGACACCAGGCTCTATGGGGCTGTTGTCTTACTGGCTAAA
CTTCAACAAGTGTTCTTCGCTTACACAGATGCTGCTCAAGTAGATTGTTTTGATCCTTGCTAGATTCTTCTTGGTTGGAT
TTCCGTCACGGAGATGCCGAAGCGATTTTGCTGTAAATATCGTGTGGGTTGTCAAAGGGTGCCCTGTCACATAGCAGCTG
TAAATATTTTATAGCGCCTTTCTTGCAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14996.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis