Browse Element(s) Details


Os.15012.1.S1_a_at

Description gb:AK120654.1
DB_XREF= gi:37990277
TID=Os.15012.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15012 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033097M22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013157J23, full insert sequence.
FL= gb:AK120654.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2784011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27820OsAffx.25259.1.S1_s_at11/113+15939931..15945353expressed protein
LOC_Os03g27820Os.19566.1.S1_at11/113+15939931..15945353expressed protein
LOC_Os03g27830Os.50274.1.S2_at11/113+15945772..15948565expressed protein
LOC_Os03g27830Os.50274.1.S1_a_at11/113+15945772..15948565expressed protein
LOC_Os03g27830OsAffx.3350.1.S1_s_at11/113+15945772..15948565expressed protein
LOC_Os03g27840Os.15012.1.S1_a_at11/113+15965195..15971595expressed protein
LOC_Os03g27840Os.15012.1.S2_a_at11/113+15965195..15971595expressed protein
LOC_Os03g27850NANA3+15978130..15979305expressed protein
LOC_Os03g27860Os.47463.1.S1_x_at5/113+15980820..15984379transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27860Os.14491.2.S1_x_at4/113+15980820..15984379transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27870NANA3+15987489..15993974transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27880Os.54775.1.S1_at11/113+15995255..15997501pentatricopeptide, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15012.1.S1_a_at--213--2791Chr03:15969330..15969354 (25 bp)
AAGAGAGCGGGAAGCAGCACGTTCT
LOC_Os03g27840
Os.15012.1.S1_a_at--456--3411Chr03:15969344..15969368 (25 bp)
CAGCACGTTCTGTTGGAAGGGTATC
LOC_Os03g27840
Os.15012.1.S1_a_at--962--5311Chr03:15969359..15969383 (25 bp)
GAAGGGTATCTTATCGTGATCCTTA
LOC_Os03g27840
Os.15012.1.S1_a_at--254--5971Chr03:15969495..15969519 (25 bp)
GAGAAGTCCGTCATATGATTCGTAT
LOC_Os03g27840
Os.15012.1.S1_a_at--1046--2791Chr03:15969621..15969645 (25 bp)
AAGATCAAGATCTCGTTCACCTTCG
LOC_Os03g27840
Os.15012.1.S1_a_at--779--10511Chr03:15969636..15969660 (25 bp)
TTCACCTTCGTATTCTAGACGCCAT
LOC_Os03g27840
Os.15012.1.S1_a_at--932--4491Chr03:15969662..15969686 (25 bp)
GCCGTGGTACACATGCTGAAAGCAA
LOC_Os03g27840
Os.15012.1.S1_a_at--699--2731Chr03:15969681..15969705 (25 bp)
AAGCAACTACCGAAGCAAGCCAAAG
LOC_Os03g27840
Os.15012.1.S1_a_at--1049--5151Chr03:15969695..15969719 (25 bp)
GCAAGCCAAAGACTCCAAGGGTTGA
LOC_Os03g27840
Os.15012.1.S1_a_at--1093--8011Chr03:15969736..15969760 (25 bp)
GGAGGTTCAGATGACACCAGTGACC
LOC_Os03g27840
Os.15012.1.S1_a_at--1034--5631Chr03:15969748..15969772 (25 bp)
GACACCAGTGACCTGAAAGTTGCAG
LOC_Os03g27840
Target Sequence 
AAGAGAGCGGGAAGCAGCACGTTCTGTTGGAAGGGTATCTTATCGTGATCCTTATAGGGAACAAAGGAGAAGTCCGTCAT
ATGATTCGTATTCAAGGGGCAGAAGATCAAGGTCAAGATCAAGATCTCGTTCACCTTCGTATTCTAGACGCCATGGCCGT
GGTACACATGCTGAAAGCAACTACCGAAGCAAGCCAAAGACTCCAAGGGTTGAATACATCACTGAATTTGGAGGTTCAGA
TGACACCAGTGACCTGAAAGTTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15012.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis