Browse Element(s) Details


Os.15012.1.S2_a_at

Description gb:CB641669
DB_XREF= gi:29636660
DB_XREF=OSJNEb01G22.r
CLONE=OSJNEb01G22
TID=Os.15012.1
CNT=16
FEA=FLmRNA
TIER=ConsEnd
STK=1
UG=Os.15012 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033097M22, full insert sequence
FL= gb:AK120654.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2784011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27820OsAffx.25259.1.S1_s_at11/113+15939931..15945353expressed protein
LOC_Os03g27820Os.19566.1.S1_at11/113+15939931..15945353expressed protein
LOC_Os03g27830Os.50274.1.S2_at11/113+15945772..15948565expressed protein
LOC_Os03g27830Os.50274.1.S1_a_at11/113+15945772..15948565expressed protein
LOC_Os03g27830OsAffx.3350.1.S1_s_at11/113+15945772..15948565expressed protein
LOC_Os03g27840Os.15012.1.S1_a_at11/113+15965195..15971595expressed protein
LOC_Os03g27840Os.15012.1.S2_a_at11/113+15965195..15971595expressed protein
LOC_Os03g27850NANA3+15978130..15979305expressed protein
LOC_Os03g27860Os.47463.1.S1_x_at5/113+15980820..15984379transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27860Os.14491.2.S1_x_at4/113+15980820..15984379transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27870NANA3+15987489..15993974transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27880Os.54775.1.S1_at11/113+15995255..15997501pentatricopeptide, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15012.1.S2_a_at--319--9771Chr03:15970571..15970595 (25 bp)
TAATGAGCAAACAACTTAACAAGCA
LOC_Os03g27840
Os.15012.1.S2_a_at--923--10471Chr03:15970586..15970720 (25 bp)
TTAACAAGCAAATTCGAAAGGACAC
LOC_Os03g27840
Os.15012.1.S2_a_at--202--2251Chr03:15970771..15970795 (25 bp)
AACTTGCGGAGGTAGGTCGGTACAG
LOC_Os03g27840
Os.15012.1.S2_a_at--70--4071Chr03:15971095..15971119 (25 bp)
CGACATTATAGCAGAAGCCGTAGTA
LOC_Os03g27840
Os.15012.1.S2_a_at--631--1971Chr03:15971311..15971335 (25 bp)
ACTGAATACCAGCTGCACCAATCAC
LOC_Os03g27840
Os.15012.1.S2_a_at--206--3371Chr03:15971333..15971357 (25 bp)
CACCAATGAAGTAACCCGTCTCTGT
LOC_Os03g27840
Os.15012.1.S2_a_at--1103--5311Chr03:15971340..15971364 (25 bp)
GAAGTAACCCGTCTCTGTACTCTAT
LOC_Os03g27840
Os.15012.1.S2_a_at--533--7011Chr03:15971356..15971380 (25 bp)
GTACTCTATATATTCACATTGTGGT
LOC_Os03g27840
Os.15012.1.S2_a_at--613--731Chr03:15971420..15971444 (25 bp)
ATGTTTTAATTCTTCTTGACTGTTA
LOC_Os03g27840
Os.15012.1.S2_a_at--901--4931Chr03:15971472..15971496 (25 bp)
GCTTGGTGTACGTAGCTGTATCTCT
LOC_Os03g27840
Os.15012.1.S2_a_at--829--9931Chr03:15971480..15971504 (25 bp)
TACGTAGCTGTATCTCTTGGTTTAA
LOC_Os03g27840
Target Sequence 
TAATGAGCAAACAACTTAACAAGCAAATTCGAAAGGACACNTGCTGCTGAGATAGCAAAGAAACGAGAACAGGAACGCCA
AAGGCAGGAAAAACTTGCGGAGGTAGGTCGGTACAGGGGTCGAAGCAGGAGCCTTAGCCGATCTCCACCAAGAAGGCGAC
ATTATAGCAGAAGCCGTAGTAGGAGTAGAAGTCCAAGGAGGTACCATTCACGATCCCAGTCTCATTCCCGTTCGCCTTCT
CGCTCTCCAAGGTACAGAAGCAGGTCAAGGCACTGAATACCAGCTGCACCAATCACCAATGAAGTAACCCGTCTCTGTAC
TCTATATATTCACATTGTGGTGTTTTTAGATTTTATTTGCTTTTGCNNNTTCTCCACGTTATTATGTTTTAATTCTTCTT
GACTGTTAGAAGCACCCTGGATCCCTTTCAACCTTGCTTGGTGTACGTAGCTGTATCTCTTGGTTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15012.1.S2_a_at     

Putative homologies in rice

Putative homologies in arabidopsis