Browse Element(s) Details


Os.15074.1.S1_at

Description gb:AK062465.1
DB_XREF= gi:32972483
TID=Os.15074.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15074 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-103-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-E01, full insert sequence.
FL= gb:AK062465.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5149011/11PHD-finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g51450OsAffx.16021.1.S1_at11/116+31160734..31168410PHD-finger family protein, expressed
LOC_Os06g51450Os.5716.1.S1_at11/116+31160734..31168410PHD-finger family protein, expressed
LOC_Os06g51460Os.23434.1.S1_at11/116+31168672..31173839ABC transporter family protein, putative, expressed
LOC_Os06g51460Os.23434.1.S1_s_at11/116+31168672..31173839ABC transporter family protein, putative, expressed
LOC_Os06g51470OsAffx.16018.1.S1_at11/116+31178205..31178814expressed protein
LOC_Os06g51480Os.9174.1.S1_a_at11/116+31180672..31183728expressed protein
LOC_Os06g51480Os.9174.1.S1_at11/116+31180672..31183728expressed protein
LOC_Os06g51480Os.9174.2.S1_x_at11/116+31180672..31183728expressed protein
LOC_Os06g51490Os.15074.1.S1_at11/116+31183920..31186614PHD-finger family protein, expressed
LOC_Os06g51500OsAffx.5166.1.S1_at11/116+31203001..31205774expressed protein
LOC_Os06g51510Os.7937.1.S1_s_at11/116+31207369..31210394expressed protein
LOC_Os06g51520Os.49118.1.S1_at11/116+31211405..31216520lysine ketoglutarate reductase trans-splicing related 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15074.1.S1_at--1130--5991Chr06:31184802..31184826 (25 bp)
GAGACCGCAGTGTTCTATATTGCAT
LOC_Os06g51490
Os.15074.1.S1_at--301--71Chr06:31184784..31184808 (25 bp)
ATTGCATTTGCCGTAAGCCATATGA
LOC_Os06g51490
Os.15074.1.S1_at--574--3091Chr06:31184758..31184782 (25 bp)
AATAGGGCCATGATCGCATGTGATC
LOC_Os06g51490
Os.15074.1.S1_at--55--6611Chr06:31184710..31184734 (25 bp)
GATTGTATCAAATTGCATGGACCCC
LOC_Os06g51490
Os.15074.1.S1_at--1040--2411Chr06:31184681..31184705 (25 bp)
AAAAACATTCTATTGCCCTGCATGC
LOC_Os06g51490
Os.15074.1.S1_at--621--9051Chr06:31184663..31184687 (25 bp)
TGCATGCCGTCCTAATAATGGCGGA
LOC_Os06g51490
Os.15074.1.S1_at--324--6451Chr06:31184281..31184305 (25 bp)
GATCAACGACCGAAGCAGGACCTCA
LOC_Os06g51490
Os.15074.1.S1_at--1122--7631Chr06:31184220..31184244 (25 bp)
GGGAGCTATCCAGTGCAACAGTAGT
LOC_Os06g51490
Os.15074.1.S1_at--1056--2411Chr06:31184157..31184181 (25 bp)
AAAACTTCTACGTTGTCATAGCGAA
LOC_Os06g51490
Os.15074.1.S1_at--356--1071Chr06:31184105..31184129 (25 bp)
AGGGTTCTCCATCGAACAGCTAGAA
LOC_Os06g51490
Os.15074.1.S1_at--289--3071Chr06:31184041..31184065 (25 bp)
AATCTTCTCTTGTCAGCTTTAGGTA
LOC_Os06g51490
Target Sequence 
GAGACCGCAGTGTTCTATATTGCATTTGCCGTAAGCCATATGATAATAGGGCCATGATCGCATGTGATCAATGTGACGAA
TGGTATCATTTTGATTGTATCAAATTGCATGGACCCCCTCCAAAAACATTCTATTGCCCTGCATGCCGTCCTAATAATGG
CGGAGAGTNATANTATCNCTTCCATGNCTTAGCCCATGAGGACGATAGATCAACGACCGAAGCAGGACCTCACACCCCTC
CGGCATCTTGTGAAGCAGCAGGAAGAGTGGGAGCTATCCAGTGCAACAGTAGTAGCCAATGGGAGAAAACACATGTAAGG
GTCGATTTAATAAAACTTCTACGTTGTCATAGCGAAACTGACAGCTCGTGGAGAGAAAGCAAAAGGGTTCTCCATCGAAC
AGCTAGAAGACGTAGTAATTTTTTAGGGCTGTTATGATATTTACATCAATCTTCTCTTGTCAGCTTTAGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15074.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis