Browse Element(s) Details


Os.15077.1.S1_a_at

Description gb:AK065111.1
DB_XREF= gi:32975129
TID=Os.15077.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15077 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001O02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001O02, full insert sequence.
FL= gb:AK065111.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3208011/11Thiamine pyrophosphate enzyme, central domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32030OsAffx.22629.1.S1_at2/111+17861742..17863764retrotransposon protein, putative, unclassified
LOC_Os01g32044OsAffx.19950.1.S1_at1/111+17866666..17869123hypothetical protein
LOC_Os01g32044OsAffx.5782.1.S1_at1/111+17866666..17869123hypothetical protein
LOC_Os01g32060NANA1+17875429..17876778hypothetical protein
LOC_Os01g32070NANA1+17878467..17880574retrotransposon protein, putative, unclassified
LOC_Os01g32080Os.15077.1.S1_a_at11/111+17887607..17891787Thiamine pyrophosphate enzyme, central domain containing protein, expressed
LOC_Os01g32090OsAffx.2129.1.S1_at11/111+17892266..17894322pentatricopeptide, putative, expressed
LOC_Os01g32100Os.47463.1.S1_x_at5/111+17896918..17900054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32100Os.14491.2.S1_x_at4/111+17896918..17900054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32100Os.41934.1.A1_x_at2/111+17896918..17900054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32110NANA1+17903209..17906304transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32120Os.53456.1.S1_at11/111+17908061..17908950EF hand family protein, expressed
LOC_Os01g32130Os.1423.1.S1_at11/111+17910565..17913133expressed protein
LOC_Os01g32140OsAffx.23469.1.S1_x_at9/111+17916024..17917040hypothetical protein
LOC_Os01g32140Os.47086.1.S1_at1/111+17916024..17917040hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009082biological_processbranched chain family amino acid biosynthesis
GO:0003984molecular_functionacetolactate synthase activity
GO:0004737molecular_functionpyruvate decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15077.1.S1_a_at--813--6691Chr01:17891271..17891295 (25 bp)
GTTCCAGCTGCTGGTTACCATAAAA
LOC_Os01g32080
Os.15077.1.S1_a_at--967--3611Chr01:17891325..17891349 (25 bp)
CTTGTTGAGACACCAGATGAGCTAA
LOC_Os01g32080
Os.15077.1.S1_a_at--877--9631Chr01:17891361..17891385 (25 bp)
TCAGAGTCGTTTCGTGCCAGGAAGC
LOC_Os01g32080
Os.15077.1.S1_a_at--1039--6891Chr01:17891465..17891489 (25 bp)
GTATCATACCAGAACGCAGGTCCCA
LOC_Os01g32080
Os.15077.1.S1_a_at--1159--3391Chr01:17891474..17891498 (25 bp)
CAGAACGCAGGTCCCAGTTAATAAG
LOC_Os01g32080
Os.15077.1.S1_a_at--537--8131Chr01:17891522..17891546 (25 bp)
GGACACCCATGGAAGAACATCTTAT
LOC_Os01g32080
Os.15077.1.S1_a_at--780--5551Chr01:17891566..17891590 (25 bp)
GAAAGATCCTGGGTAGTACTCCGTA
LOC_Os01g32080
Os.15077.1.S1_a_at--370--6511Chr01:17891606..17891630 (25 bp)
GATATCGAATTCAAGCTGTCTGTTT
LOC_Os01g32080
Os.15077.1.S1_a_at--776--9711Chr01:17891616..17891640 (25 bp)
TCAAGCTGTCTGTTTTGTAATGTAC
LOC_Os01g32080
Os.15077.1.S1_a_at--909--6971Chr01:17891642..17891666 (25 bp)
GTACCCGTGTTACCGTGTACAGTAT
LOC_Os01g32080
Os.15077.1.S1_a_at--674--7071Chr01:17891692..17891716 (25 bp)
GTAATTCACTCATGATGTCGATGCA
LOC_Os01g32080
Target Sequence 
GTTCCAGCTGCTGGTTACCATAAAATGATGGAAGCTTTTGGAGGAAAAGGTTATCTTGTTGAGACACCAGATGAGCTAAA
ATCCGCCCTTTCAGAGTCGTTTCGTGCCAGGAAGCCNANCGGTGATAAATGTTATCATTGATCCTTATNCTGGTGCAGAG
AGCGGTAGAATGCAGCNATAAGAACTGAAGGTGTTTGTATCATACCAGAACGCAGGTCCCAGTTAATAAGCAATGTCCTA
TTGAAATTAAAACGGACACCCATGGAAGAACATCTTATATCACTGTCCCTGAAATAAGAAAGATCCTGGGTAGTACTCCG
TACTTAATGGCATGTGAGATATCGAATTCAAGCTGTCTGTTTTGTAATGTACCGTACCCGTGTTACCGTGTACAGTATNN
TAAAGAAAAAATGTTTGTGGTTAGTAATTCACTCATGATGTCGATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15077.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis