Browse Element(s) Details


Os.15104.1.S1_s_at

Description gb:AK066867.1
DB_XREF= gi:32976885
TID=Os.15104.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15104 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glutamine synthetase (OSJNBa0018F16.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013075P13, full insert sequence.
FL= gb:AK066867.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3182011/11glutamine synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31780NANA10+16334542..16335327NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os10g31790Os.15802.2.S1_x_at11/1110+16336424..16344008ubiquitin family protein, putative, expressed
LOC_Os10g31800NANA10+16344657..16345385hypothetical protein
LOC_Os10g31810Os.17674.1.S1_at11/1110+16346191..16348479expressed protein
LOC_Os10g31820Os.15104.1.S1_s_at11/1110+16357513..16364101glutamine synthetase, putative, expressed
LOC_Os10g31830Os.46898.1.S1_at11/1110+16364171..16368113Ras-related protein Rab-18, putative, expressed
LOC_Os10g31840OsAffx.30629.1.S1_at11/1110+16373378..16373719hypothetical protein
LOC_Os10g31850Os.7339.1.S1_at11/1110+16375561..16379105CHY zinc finger family protein, expressed
LOC_Os10g31850Os.7339.2.S1_at11/1110+16375561..16379105CHY zinc finger family protein, expressed
LOC_Os10g31864OsAffx.20287.1.S1_at11/1110+16380787..16413144expressed protein
LOC_Os10g31864Os.17184.1.S1_at11/1110+16380787..16413144expressed protein
LOC_Os10g31864Os.24870.1.S1_s_at1/1110+16380787..16413144expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009399biological_processnitrogen fixation
GO:0004356molecular_functionglutamate-ammonia ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15104.1.S1_s_at--872--10471Chr10:16363220..16363244 (25 bp)
TTAAATCCTTCGATGCGTGCGCAAA
LOC_Os10g31820
Os.15104.1.S1_s_at--1016--10711Chr10:16363259..16363283 (25 bp)
TTGCTGCTATAGTTGCTGCTGGGAT
LOC_Os10g31820
Os.15104.1.S1_s_at--26--8071Chr10:16363295..16363319 (25 bp)
GGAGAAGCCTTACGTTGCCTGAACC
LOC_Os10g31820
Os.15104.1.S1_s_at--877--8511Chr10:16363619..16363643 (25 bp)
TGGAATCTGTCGAAGCACTAGCTGC
LOC_Os10g31820
Os.15104.1.S1_s_at--1061--8371Chr10:16363669..16363693 (25 bp)
GGCGATAAACTTGTCACTGCCGTTA
LOC_Os10g31820
Os.15104.1.S1_s_at--1107--7091Chr10:16363681..16363705 (25 bp)
GTCACTGCCGTTATTGCTGTACGAA
LOC_Os10g31820
Os.15104.1.S1_s_at--308--4051Chr10:16363858..16363882 (25 bp)
CGATCTCATTCACCGTTACTAGGGT
LOC_Os10g31820
Os.15104.1.S1_s_at--663--2471Chr10:16363885..16363909 (25 bp)
AACACTAGTTAGTTCCACGGAGCAA
LOC_Os10g31820
Os.15104.1.S1_s_at--970--131Chr10:16363926..16363950 (25 bp)
ATTACTACGACCCACGAAATTGCTT
LOC_Os10g31820
Os.15104.1.S1_s_at--993--5591Chr10:16363941..16363965 (25 bp)
GAAATTGCTTATTCTCGCGTCCTTT
LOC_Os10g31820
Os.15104.1.S1_s_at--106--10391Chr10:16363963..16363987 (25 bp)
TTTTCCGCTGTACTTGCAGTTGCAG
LOC_Os10g31820
Target Sequence 
TTAAATCCTTCGATGCGTGCGCAAACCCGCACTTGGGCCTTGCTGCTATAGTTGCTGCTGGGATTGATGGACTCAGGAGA
AGCCTTACGTTGCCTGAACCAACTGAATCAAACCCTGCAGGTTATGCCTCCAACTCCAAGCTCAAAAGGATGCCGAAGGA
CTTGATGGAATCTGTCGAAGCACTAGCTGCAGACAAAATCATGCATGAATTGATCGGCGATAAACTTGTCACTGCCGTTA
TTGCTGTACGAAAGGCTGAGATNGATCACTACGAGAAGAACCCTGCAGCATTCGCCGATCTCATTCACCGTTACTAGGGT
GAAACACTAGTTAGTTCCACGGAGCAAAGAGGATTACGAGTGAATTACTACGACCCACGAAATTGCTTATTCTCGCGTCC
TTTTCCGCTGTACTTGCAGTTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15104.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis