Browse Element(s) Details


Os.15140.1.S1_at

Description gb:AK068204.1
DB_XREF= gi:32978222
TID=Os.15140.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15140 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013136O09, full insert sequence.
FL= gb:AK068204.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1511011/11Syntaxin 23, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15039OsAffx.23254.1.S1_x_at11/111+8444563..8448291pectinesterase family protein, putative, expressed
LOC_Os01g15039OsAffx.23254.1.S1_at11/111+8444563..8448291pectinesterase family protein, putative, expressed
LOC_Os01g15039Os.7348.2.S1_x_at1/111+8444563..8448291pectinesterase family protein, putative, expressed
LOC_Os01g15039Os.54835.1.S1_s_at1/111+8444563..8448291pectinesterase family protein, putative, expressed
LOC_Os01g15060NANA1+8452144..8452824hypothetical protein
LOC_Os01g15070NANA1+8454228..8454488hypothetical protein
LOC_Os01g15080OsAffx.20313.1.S1_x_at6/111+8454761..8455512hypothetical protein
LOC_Os01g15090NANA1+8457874..8458128hypothetical protein
LOC_Os01g15100NANA1+8468176..8468442hypothetical protein
LOC_Os01g15110Os.15140.1.S1_at11/111+8472306..8476307Syntaxin 23, putative, expressed
LOC_Os01g15110OsAffx.26720.1.S1_at1/111+8472306..8476307Syntaxin 23, putative, expressed
LOC_Os01g15120Os.12708.1.S1_at11/111+8483322..8486420hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g15130Os.50780.1.S1_at11/111+8487384..8489147hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g15139OsAffx.22222.1.S1_x_at11/111+8489757..8490557hypothetical protein
LOC_Os01g15150OsAffx.11062.1.S1_at11/111+8493282..8493653hypothetical protein
LOC_Os01g15150OsAffx.22005.1.S1_x_at1/111+8493282..8493653hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000903biological_processcellular morphogenesis during vegetative growth
GO:0006886biological_processintracellular protein transport
GO:0006891biological_processintra-Golgi vesicle-mediated transport
GO:0006896biological_processGolgi to vacuole transport
GO:0006944biological_processmembrane fusion
GO:0007033biological_processvacuole organization and biogenesis
GO:0009660biological_processamyloplast organization and biogenesis
GO:0009959biological_processnegative gravitropism
GO:0010118biological_processstomatal movement
GO:0005770cellular_componentlate endosome
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0016021cellular_componentintegral to membrane
GO:0030140cellular_componenttrans-Golgi network transport vesicle
GO:0005486molecular_functiont-SNARE activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15140.1.S1_at--1079--5631Chr01:8472898..8472922 (25 bp)
GACACCCATATCGAGAATGCTGTTA
LOC_Os01g15110
Os.15140.1.S1_at--99--2311Chr01:8472856..8472880 (25 bp)
AAAGGCCAACTCTCTAAGGCTGCTA
LOC_Os01g15110
Os.15140.1.S1_at--646--5471Chr01:8472725..8472842 (25 bp)
GAACTCTTCGCTGATATGCTTGTTG
LOC_Os01g15110
Os.15140.1.S1_at--786--7731Chr01:8472686..8472710 (25 bp)
GGTGGTCCTGCTCATAGTGATAATC
LOC_Os01g15110
Os.15140.1.S1_at--683--10071Chr01:8472672..8472696 (25 bp)
TAGTGATAATCGTCCTCGCAGCCTA
LOC_Os01g15110
Os.15140.1.S1_at--596--2111Chr01:8472630..8472654 (25 bp)
ACATGGGACTCCTAGATCTGGTTGA
LOC_Os01g15110
Os.15140.1.S1_at--981--5871Chr01:8472600..8472624 (25 bp)
GAGCGAAGTATTCCTTCCTGATTTA
LOC_Os01g15110
Os.15140.1.S1_at--521--7171Chr01:8472562..8472586 (25 bp)
GTCGGGAATGTATCCTGATCTCCTG
LOC_Os01g15110
Os.15140.1.S1_at--924--6891Chr01:8472440..8472464 (25 bp)
GTATAATCGCTTGGTGTCACTCTAG
LOC_Os01g15110
Os.15140.1.S1_at--989--4151Chr01:8472395..8472419 (25 bp)
CGCCCCTGTTTATATCTTGTGATGT
LOC_Os01g15110
Os.15140.1.S1_at--99--5451Chr01:8472349..8472373 (25 bp)
GAACGAGGAGTTTGGTCTTTGCATT
LOC_Os01g15110
Target Sequence 
GACACCCATATCGAGAATGCTGTTATAGCGACTACACAAGCAAAAGGCCAACTCTCTAAGGCTGCTAAAACTCAGAAGTC
GAACTCTTCGCTGATATGCTTGTTGCTGGTTATATTCGGGGTGGTCCTGCTCATAGTGATAATCGTCCTCGCAGCCTAGG
CAGCAGCCTGGAAGAACATGGGACTCCTAGATCTGGTTGAGCTTAGAGCGAAGTATTCCTTCCTGATTTAATTTTGCTGT
GAAGTCGGGAATGTATCCTGATCTCCTGCCTGGAGGAGGGGGTTGCGTTCTGGTCTTGTGCCATGGTGGTGTATGTGATG
ATGAATGGTGTGTCTGGAATGCATGGTTTATATATAAGTAATTAAGTATAATCGCTTGGTGTCACTCTAGTGCCTCCTGC
CTTGCTCGCTCGCCCCTGTTTATATCTTGTGATGTATCGTTGAGTGAGTGTTGTAAGAACGAGGAGTTTGGTCTTTGCAT
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15140.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis