Browse Element(s) Details


Os.15175.1.S1_at

Description gb:AK101106.1
DB_XREF= gi:32986315
TID=Os.15175.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15175 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033025D17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033025D17, full insert sequence.
FL= gb:AK101106.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3103010/11Nitrate-induced NOI protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31000Os.38167.1.S1_at11/114+18333037..18343551expressed protein
LOC_Os04g31000OsAffx.8735.1.A1_at1/114+18333037..18343551expressed protein
LOC_Os04g31010Os.17392.1.S1_at11/114+18347743..18351190Ycf49, putative, expressed
LOC_Os04g31020Os.50412.1.S1_at11/114+18350970..18356299expressed protein
LOC_Os04g31020Os.52392.1.S1_at11/114+18350970..18356299expressed protein
LOC_Os04g31020OsAffx.3963.1.S1_at9/114+18350970..18356299expressed protein
LOC_Os04g31020Os.17052.1.S1_s_at3/114+18350970..18356299expressed protein
LOC_Os04g31030Os.15175.1.S1_at10/114+18359891..18363589Nitrate-induced NOI protein, expressed
LOC_Os04g31040Os.2467.1.S1_at11/114+18363856..18366414violaxanthin de-epoxidase, putative, expressed
LOC_Os04g31050Os.51850.1.S1_at11/114+18367073..18371944expressed protein
LOC_Os04g31070Os.2674.1.S1_at11/114+18372798..18376990Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os04g31070Os.57486.1.S1_x_at9/114+18372798..18376990Acyl-desaturase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009626biological_processhypersensitive response
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15175.1.S1_at--297--2671Chr04:18362168..18362192 (25 bp)
AAGCCGAAGCACAGGTCATCTGGAA
LOC_Os04g31030
Os.15175.1.S1_at--961--3651Chr04:18362214..18362238 (25 bp)
CTTCATCGGAGGGACATGGCCAGCA
LOC_Os04g31030
Os.15175.1.S1_at--850--2111Chr04:18362227..18362251 (25 bp)
ACATGGCCAGCATACTCCTAGGAGG
LOC_Os04g31030
Os.15175.1.S1_at--42--2811Chr04:18362388..18362412 (25 bp)
AAGATGATGTAGCTGTTCCACCGTT
LOC_Os04g31030
Os.15175.1.S1_at--967--2231Chr04:18362486..18362510 (25 bp)
AAATTATCGCCAAACACTTCTACCA
LOC_Os04g31030
Os.15175.1.S1_at--650--10571Chr04:18362503..18362527 (25 bp)
TTCTACCAGGCAACCGGACACTAAT
LOC_Os04g31030
Os.15175.1.S1_at--972--1771Chr04:18362515..18362539 (25 bp)
ACCGGACACTAATCGCAGCCAGGAA
LOC_Os04g31030
Os.15175.1.S1_at--21--2331Chr02:26246032..26246317 (25 bp)
AAAGTGAAACAGACATGCCCTTGCT
NONE
Os.15175.1.S1_at--210--611Chr04:18363291..18363315 (25 bp)
ATGCCCTTGCTGTATACTTTGAGAC
LOC_Os04g31030
Os.15175.1.S1_at--735--9111Chr04:18363340..18363364 (25 bp)
TGCTGGAGAGGTTCCTTAGCTACTT
LOC_Os04g31030
Os.15175.1.S1_at--455--4851Chr04:18363358..18363382 (25 bp)
GCTACTTGTTGATCAGATTGCTACA
LOC_Os04g31030
Target Sequence 
AAGCCGAAGCACAGGTCATCTGGAATGCAGACTCCAGAGAGGAGGGCTTCATCGGAGGGACATGGCCAGCATACTCCTAG
GAGGAGCAGGGACAAGCAGGGTGGCCGAGGCTATGATGCACCTGAAGATGATGTAGCTGTTCCACCGTTTGGTGAGTGGG
ATGAGGGTAATGCAGCATCAGGCGAAAAATTTACTGGTATCTTCAACAGGGTGAGGGATGATAAATTATCGCCAAACACT
TCTACCAGGCAACCGGACACTAATCGCAGCCAGGAAAACAAAGTGAAACAGACATGCCCTTGCTGTATACTTTGAGACAA
CGGGGGATAAGATCACAGATATTGCTGGAGAGGTTCCTTAGCTACTTGTTGATCAGATTGCTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15175.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis