Browse Element(s) Details


Os.15186.1.S1_at

Description gb:AK099819.1
DB_XREF= gi:32985028
TID=Os.15186.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15186 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013100I11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013100I11, full insert sequence.
FL= gb:AK099819.1 gb:AK062237.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0874011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08720Os.11697.1.S1_at11/116+4346160..4352378Serine carboxypeptidase II-2 precursor, putative, expressed
LOC_Os06g08730OsAffx.15316.1.S1_at11/116+4361881..4369595expressed protein
LOC_Os06g08740Os.15186.1.S1_at11/116+4369967..4375384expressed protein
LOC_Os06g08750Os.14290.1.S1_at11/116+4378814..4382419integral membrane transporter family protein, putative, expressed
LOC_Os06g08760OsAffx.27516.1.S1_at11/116+4383884..4384111hypothetical protein
LOC_Os06g08770Os.54465.1.S1_at11/116+4387234..4390752RuvB-like 2, putative, expressed
LOC_Os06g08780OsAffx.15317.1.S1_at11/116+4391767..4392090hypothetical protein
LOC_Os06g08790Os.273.1.S1_at11/116+4392377..4400130origin recognition complex subunit 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15186.1.S1_at--61--4631Chr06:4370477..4370501 (25 bp)
GCGATGGCACCGAAGGTTCCGATGA
LOC_Os06g08740
Os.15186.1.S1_at--888--2731Chr06:4370453..4370477 (25 bp)
AAGAATTTAGCTCGGCTGCATCCAC
LOC_Os06g08740
Os.15186.1.S1_at--369--1091Chr06:4370428..4370452 (25 bp)
AGTGAAAACTACAGGTCCCGCTCAG
LOC_Os06g08740
Os.15186.1.S1_at--467--9671Chr06:4370407..4370431 (25 bp)
TCAGCCACCAGCCATGTCAAGGAAG
LOC_Os06g08740
Os.15186.1.S1_at--121--8211Chr06:4370387..4370411 (25 bp)
GGAAGGACTCCTTCGGAGATCTGCT
LOC_Os06g08740
Os.15186.1.S1_at--1085--4331Chr06:4370332..4370356 (25 bp)
CCAGTTCCTTTTCAAGATACCCGAG
LOC_Os06g08740
Os.15186.1.S1_at--9--231Chr06:4370286..4370310 (25 bp)
ATATCCCAGGACTTCGATCCTCAAT
LOC_Os06g08740
Os.15186.1.S1_at--92--10071Chr06:4370148..4370172 (25 bp)
TAGTCTTCAGTATCCACCCTGTAAA
LOC_Os06g08740
Os.15186.1.S1_at--874--3951Chr06:4370101..4370125 (25 bp)
CGGATCGTGTCGGTATCTTTCAGGA
LOC_Os06g08740
Os.15186.1.S1_at--699--9531Chr06:4370051..4370075 (25 bp)
TCATTGGTTCTTTTTAACTCGGGCT
LOC_Os06g08740
Os.15186.1.S1_at--207--6831Chr06:4369992..4370016 (25 bp)
GTTTACAACTTTCTTCAATGCTGAG
LOC_Os06g08740
Target Sequence 
GCGATGGCACCGAAGGTTCCGATGAAGAATTTAGCTCGGCTGCATCCACAGTGAAAACTACAGGTCCCGCTCAGCCACCA
GCCATGTCAAGGAAGGACTCCTTCGGAGATCTGCTGATGAATCTTCCCCGCATCGCCTCGTTGCCCCAGTTCCTTTTCAA
GATACCCGAGGATTCTGAGAATTGAGTCTGGATATCCCAGGACTTCGATCCTCAATTCCTCATTCCCTAAATGAGGGAAG
CTTCTGTAAAAAGAGATTTGTACCTGAGCAATAAGCCAGCCCGACCCCCCCTCTCTTGTCTTCTGTGGATGAGATGAGAG
AGCTGTTCTTAGTCTTCAGTATCCACCCTGTAAATGTGTAATCGATTAGGTTGCTTCGGATCGTGTCGGTATCTTTCAGG
ATTNGCTATGGGTCGTGGATAAAGTGTTCATTGGTTCTTTTTAACTCGGGCTTGCCCNTGTGCAAAATTAGAATTCAAGT
CAAATTGTTTACAACTTTCTTCAATGCTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15186.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis