Browse Element(s) Details


Os.15216.1.S1_at

Description gb:AK059586.1
DB_XREF= gi:32969604
TID=Os.15216.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15216 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033133A18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-B11, full insert sequence.
FL= gb:AK059586.1 gb:AK069622.1 gb:AK103583.1 gb:AK074017.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3619011/11Tubby protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g36160Os.37925.1.S1_a_at11/115+21349271..21352496bZIP transcription factor family protein, expressed
LOC_Os05g36160Os.411.2.S1_x_at1/115+21349271..21352496bZIP transcription factor family protein, expressed
LOC_Os05g36170Os.6227.2.S1_x_at1/115+21355514..21361669retrotransposon protein, putative, unclassified
LOC_Os05g36180NANA5+21362297..21365438retrotransposon protein, putative, unclassified
LOC_Os05g36184NANA5+21368562..21372649expressed protein
LOC_Os05g36190Os.15216.1.S1_at11/115+21377109..21380219Tubby protein, putative, expressed
LOC_Os05g36200NANA5+21383025..21386261retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g36210OsAffx.16109.1.S1_at11/115+21390828..21391733hypothetical protein
LOC_Os05g36220OsAffx.24383.1.S1_at3/115+21391977..21394211transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g36230OsAffx.24188.1.S1_x_at1/115+21396048..21398667transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g36230OsAffx.24188.1.S1_at1/115+21396048..21398667transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g36240OsAffx.28294.3.S1_x_at11/115+21398937..21401641hypothetical protein
LOC_Os05g36240OsAffx.28294.2.S1_at8/115+21398937..21401641hypothetical protein
LOC_Os05g36240OsAffx.28294.2.S1_x_at8/115+21398937..21401641hypothetical protein
LOC_Os05g36240Os.10038.1.S1_s_at1/115+21398937..21401641hypothetical protein
LOC_Os05g36250OsAffx.14983.1.S1_at11/115+21405209..21405721hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
GO:0008081molecular_functionphosphoric diester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15216.1.S1_at--728--6951Chr05:21377479..21377503 (25 bp)
GTAGCTTCGACACAAAACTGGCCTG
LOC_Os05g36190
Os.15216.1.S1_at--108--9171Chr05:21377381..21377405 (25 bp)
TGCCCAAGGGCTCTAGATCATGTTT
LOC_Os05g36190
Os.15216.1.S1_at--1048--10711Chr05:21377358..21377382 (25 bp)
TTGCATTTTGTTGTGTCGTCTTGGC
LOC_Os05g36190
Os.15216.1.S1_at--791--4731Chr05:21377335..21377359 (25 bp)
GCTGTATTTCTGCTTGTAGCCTGGA
LOC_Os05g36190
Os.15216.1.S1_at--513--8171Chr05:21377313..21377337 (25 bp)
GGAACTGGATTTCTCAGCCTGTATG
LOC_Os05g36190
Os.15216.1.S1_at--919--1651Chr05:21377298..21377322 (25 bp)
AGCCTGTATGTTTCACCTGGTAGCA
LOC_Os05g36190
Os.15216.1.S1_at--42--8651Chr05:21377256..21377280 (25 bp)
TGGGACAGCGGTTCATGCATTGCAT
LOC_Os05g36190
Os.15216.1.S1_at--1081--211Chr05:21377225..21377249 (25 bp)
ATTTGTGTGGTGTACATGCGGTTCC
LOC_Os05g36190
Os.15216.1.S1_at--557--3531Chr05:21377211..21377235 (25 bp)
CATGCGGTTCCGGATTTAAGCTGAA
LOC_Os05g36190
Os.15216.1.S1_at--92--7971Chr05:21377185..21377209 (25 bp)
GGATCCGTTCATGTCTTTGTTAAGC
LOC_Os05g36190
Os.15216.1.S1_at--792--9051Chr05:21377158..21377182 (25 bp)
TGCATGGATGCCGTGTTCTGGTAAA
LOC_Os05g36190
Target Sequence 
GTAGCTTCGACACAAAACTGGCCTGCGAATGAGGGAAACAGTGAGCTCTAATGGAGGCAGAACTGGAAATGCAACANGAG
AGCAACTTGAGAAATGTAATGCCCAAGGGCTCTAGATCATGTTTGCATTTTGTTGTGTCGTCTTGGCTGTATTTCTGCTT
GTAGCCTGGAACTGGATTTCTCAGCCTGTATGTTTCACCTGGTAGCACCATGATAGGTTTCCTTTGGGACAGCGGTTCAT
GCATTGCATTTTTCCATTTGTGTGGTGTACATGCGGTTCCGGATTTAAGCTGAAAGGATCCGTTCATGTCTTTGTTAAGC
TTTGCATGGATGCCGTGTTCTGGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15216.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis