Browse Element(s) Details


Os.37925.1.S1_a_at

Description gb:AK120656.1
DB_XREF= gi:37990279
TID=Os.37925.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37925 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 31166 OSE2-like protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013158B06, full insert sequence.
FL= gb:AK120656.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3616011/11bZIP transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g36100OsAffx.14982.1.S1_at11/115+21321505..21325846AP2 domain containing protein
LOC_Os05g36110OsAffx.27195.1.S1_at11/115+21326971..21331165membrane protein, putative, expressed
LOC_Os05g36110Os.14845.1.S1_at11/115+21326971..21331165membrane protein, putative, expressed
LOC_Os05g36120Os.17654.1.S1_at11/115+21331840..21337553Polypyrimidine tract-binding protein homolog 3, putative, expressed
LOC_Os05g36130NANA5+21338235..21338601transposon protein, putative, unclassified
LOC_Os05g36140OsAffx.4538.1.S1_at11/115+21341864..21342823expressed protein
LOC_Os05g36150Os.54273.1.S1_at11/115+21344587..21348401integral membrane Yip1 family protein, putative, expressed
LOC_Os05g36160Os.37925.1.S1_a_at11/115+21349271..21352496bZIP transcription factor family protein, expressed
LOC_Os05g36160Os.411.2.S1_x_at1/115+21349271..21352496bZIP transcription factor family protein, expressed
LOC_Os05g36170Os.6227.2.S1_x_at1/115+21355514..21361669retrotransposon protein, putative, unclassified
LOC_Os05g36180NANA5+21362297..21365438retrotransposon protein, putative, unclassified
LOC_Os05g36184NANA5+21368562..21372649expressed protein
LOC_Os05g36190Os.15216.1.S1_at11/115+21377109..21380219Tubby protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006950biological_processresponse to stress
GO:0009414biological_processresponse to water deprivation
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0010182biological_processsugar mediated signaling
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37925.1.S1_a_at--269--951Chr05:21352068..21352092 (25 bp)
AGGAACAAGCCGTTGCAGTTGTCAT
LOC_Os05g36160
Os.37925.1.S1_a_at--820--6411Chr05:21352109..21352133 (25 bp)
GATCTACGAAGAACCAACTCAATGG
LOC_Os05g36160
Os.37925.1.S1_a_at--563--2591Chr05:21352146..21352170 (25 bp)
AACCCAATTTCTGTTGTTACTCTCT
LOC_Os05g36160
Os.37925.1.S1_a_at--220--6651Chr05:21352158..21352182 (25 bp)
GTTGTTACTCTCTTACAGCTACAGA
LOC_Os05g36160
Os.37925.1.S1_a_at--852--7071Chr05:21352238..21352262 (25 bp)
GTCAAGGCTTTCAGGTGACATGAAA
LOC_Os05g36160
Os.37925.1.S1_a_at--4--5331Chr05:21352278..21352302 (25 bp)
GAAGGTGTAGCTGTGCGTGATCAAA
LOC_Os05g36160
Os.37925.1.S1_a_at--1117--751Chr05:21352303..21352327 (25 bp)
ATGTCACGCCATTCAGAATTGGTCT
LOC_Os05g36160
Os.37925.1.S1_a_at--207--5211Chr05:21352318..21352342 (25 bp)
GAATTGGTCTGCGATCTGTTATTTA
LOC_Os05g36160
Os.37925.1.S1_a_at--834--10411Chr05:21352340..21352364 (25 bp)
TTATTTGTCATCAGGCTCATGCGGC
LOC_Os05g36160
Os.37925.1.S1_a_at--351--4831Chr05:21352354..21352378 (25 bp)
GCTCATGCGGCTAACTGTGTGTACA
LOC_Os05g36160
Os.37925.1.S1_a_at--435--1411Chr05:21352383..21352407 (25 bp)
AGAATAAGCCGGTTTACATGAAAGG
LOC_Os05g36160
Target Sequence 
AGGAACAAGCCGTTGCAGTTGTCATAAGAAAAAAAACACAAGATCTACGAAGAACCAACTCAATGGAATGGTAGAAGTAA
CCCAATTTCTGTTGTTACTCTCTTACAGCTACAGAGANNCTCCCGTTTTCTGTTTCCCNTANCTGATGTTTCAGGCGNCT
TGGTNGANTNGTCAAGGCTTTCAGGTGACATGAAATCTCAAATGCCATCAGAAGGTGTAGCTGTGCGTGATCAAAATGTC
ACGCCATTCAGAATTGGTCTGCGATCTGTTATTTATTTGTCATCAGGCTCATGCGGCTAACTGTGTGTACAAACAAGAAT
AAGCCGGTTTACATGAAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37925.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis