Browse Element(s) Details


Os.17654.1.S1_at

Description gb:AK102760.1
DB_XREF= gi:32987969
TID=Os.17654.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17654 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033107C19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033107C19, full insert sequence.
FL= gb:AK102760.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3612011/11Polypyrimidine tract-binding protein homolog 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g36090Os.23220.1.S1_at11/115+21305604..21309490DHHC zinc finger domain containing protein, expressed
LOC_Os05g36100OsAffx.14982.1.S1_at11/115+21321505..21325846AP2 domain containing protein
LOC_Os05g36110OsAffx.27195.1.S1_at11/115+21326971..21331165membrane protein, putative, expressed
LOC_Os05g36110Os.14845.1.S1_at11/115+21326971..21331165membrane protein, putative, expressed
LOC_Os05g36120Os.17654.1.S1_at11/115+21331840..21337553Polypyrimidine tract-binding protein homolog 3, putative, expressed
LOC_Os05g36130NANA5+21338235..21338601transposon protein, putative, unclassified
LOC_Os05g36140OsAffx.4538.1.S1_at11/115+21341864..21342823expressed protein
LOC_Os05g36150Os.54273.1.S1_at11/115+21344587..21348401integral membrane Yip1 family protein, putative, expressed
LOC_Os05g36160Os.37925.1.S1_a_at11/115+21349271..21352496bZIP transcription factor family protein, expressed
LOC_Os05g36160Os.411.2.S1_x_at1/115+21349271..21352496bZIP transcription factor family protein, expressed
LOC_Os05g36170Os.6227.2.S1_x_at1/115+21355514..21361669retrotransposon protein, putative, unclassified
LOC_Os05g36180NANA5+21362297..21365438retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17654.1.S1_at--85--8031Chr05:21332190..21332214 (25 bp)
GGAGGGTAACACGATCAGGATCTCA
LOC_Os05g36120
Os.17654.1.S1_at--12--1011Chr05:21332174..21332198 (25 bp)
AGGATCTCATTCTCCCAGATGCAGA
LOC_Os05g36120
Os.17654.1.S1_at--595--7611Chr05:21332129..21332153 (25 bp)
GGGAAACTTATCCAGCTAATCGGAT
LOC_Os05g36120
Os.17654.1.S1_at--630--1311Chr05:21332065..21332089 (25 bp)
AGATGTGAATCCTGTTCTGTCTTCT
LOC_Os05g36120
Os.17654.1.S1_at--418--6931Chr05:21332037..21332061 (25 bp)
GTAGGCCGATGCTTTGTCTTTTGCT
LOC_Os05g36120
Os.17654.1.S1_at--1027--10251Chr05:21332025..21332049 (25 bp)
TTTGTCTTTTGCTGTACCATGCTGT
LOC_Os05g36120
Os.17654.1.S1_at--1058--9971Chr05:21332011..21332035 (25 bp)
TACCATGCTGTGAGACTGACTGAAC
LOC_Os05g36120
Os.17654.1.S1_at--662--10271Chr05:21331933..21331957 (25 bp)
TTCCCTTGTTGGTTTTAGGCATCCA
LOC_Os05g36120
Os.17654.1.S1_at--225--2911Chr05:21331909..21331933 (25 bp)
AAGGATTGTGTCTGGATATTGTGCT
LOC_Os05g36120
Os.17654.1.S1_at--1080--4731Chr05:21331887..21331911 (25 bp)
GCTGTTCTAAGAGAGAGTTCTGCCC
LOC_Os05g36120
Os.17654.1.S1_at--768--2171Chr05:21331854..21331878 (25 bp)
ACAAATCGTGCCTGTTGATCTAAAA
LOC_Os05g36120
Target Sequence 
GGAGGGTAACACGATCAGGATCTCATTCTCCCAGATGCAGAGCATATAGAAACTCATCGTGGGGAAACTTATCCAGCTAA
TCGGATGACGAGTAGCAAGTTTTATTTAGGAAAGCATTGAACTTTAGATGTGAATCCTGTTCTGTCTTCTCCTGTAGGCC
GATGCTTTGTCTTTTGCTGTACCATGCTGTGAGACTGACTGAACNAGCTTGACGTTGGGGCCTTTAGCTGCACCNAATGG
TTTTAAGCTTCTTTTCTTTCCCTTGTTGGTTTTAGGCATCCAAGGATTGTGTCTGGATATTGTGCTGTTCTAAGAGAGAG
TTCTGCCCTGCCANTGAACAAATCGTGCCTGTTGATCTAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17654.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis