Browse Element(s) Details


OsAffx.4538.1.S1_at

Description tigr:9633.m03372
TID=OsAffx.4538.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3614011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g36100OsAffx.14982.1.S1_at11/115+21321505..21325846AP2 domain containing protein
LOC_Os05g36110OsAffx.27195.1.S1_at11/115+21326971..21331165membrane protein, putative, expressed
LOC_Os05g36110Os.14845.1.S1_at11/115+21326971..21331165membrane protein, putative, expressed
LOC_Os05g36120Os.17654.1.S1_at11/115+21331840..21337553Polypyrimidine tract-binding protein homolog 3, putative, expressed
LOC_Os05g36130NANA5+21338235..21338601transposon protein, putative, unclassified
LOC_Os05g36140OsAffx.4538.1.S1_at11/115+21341864..21342823expressed protein
LOC_Os05g36150Os.54273.1.S1_at11/115+21344587..21348401integral membrane Yip1 family protein, putative, expressed
LOC_Os05g36160Os.37925.1.S1_a_at11/115+21349271..21352496bZIP transcription factor family protein, expressed
LOC_Os05g36160Os.411.2.S1_x_at1/115+21349271..21352496bZIP transcription factor family protein, expressed
LOC_Os05g36170Os.6227.2.S1_x_at1/115+21355514..21361669retrotransposon protein, putative, unclassified
LOC_Os05g36180NANA5+21362297..21365438retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4538.1.S1_at--993--4991Chr05:21342767..21342791 (25 bp)
GCATGTTCGTGGAGGTTGATGTCAT
LOC_Os05g36140
OsAffx.4538.1.S1_at--380--8011Chr05:21342757..21342781 (25 bp)
GGAGGTTGATGTCATGGCCGGCGCG
LOC_Os05g36140
OsAffx.4538.1.S1_at--940--1511Chr05:21342707..21342731 (25 bp)
AGCAGCTCATCCAGCTGAGCGGTTG
LOC_Os05g36140
OsAffx.4538.1.S1_at--721--3751Chr05:21342702..21342726 (25 bp)
CTCATCCAGCTGAGCGGTTGCTGCA
LOC_Os05g36140
OsAffx.4538.1.S1_at--1020--3331Chr05:21342640..21342664 (25 bp)
CACGGACAGCGTGAGCAAGAATAAT
LOC_Os05g36140
OsAffx.4538.1.S1_at--746--5951Chr05:21342628..21342652 (25 bp)
GAGCAAGAATAATCGCTGCGGCAAG
LOC_Os05g36140
OsAffx.4538.1.S1_at--494--4711Chr05:21342573..21342597 (25 bp)
GCGGCCGTGGAGAGCTGCAGCAGGA
LOC_Os05g36140
OsAffx.4538.1.S1_at--338--4071Chr05:21342449..21342473 (25 bp)
CGAGGAGACCGAACGACCACGTCGT
LOC_Os05g36140
OsAffx.4538.1.S1_at--912--5551Chr05:21341907..21341931 (25 bp)
GAAAGAGAGGCCTAAGCTACGCAGA
LOC_Os05g36140
OsAffx.4538.1.S1_at--1007--1311Chr05:21341902..21341926 (25 bp)
AGAGGCCTAAGCTACGCAGACACGA
LOC_Os05g36140
OsAffx.4538.1.S1_at--831--9791Chr05:21341895..21341919 (25 bp)
TAAGCTACGCAGACACGACTTTCCC
LOC_Os05g36140
Target Sequence 
GCATGTTCGTGGAGGTTGATGTCATGGCCGGCGCGACGGAGCTGGACATGGAGGCGGCGGAGCAGCTCATCCAGCTGAGC
GGTTGCTGCAGCGGCGACGGCGGCGGGGGCGAGTCGGAGAGCAGGAGCACGGACAGCGTGAGCAAGAATAATCGCTGCGG
CAAGAAGGCGGCGACCGGCCGCAAGGCGGCGGCTGCGGCCGTGGAGAGCTGCAGCAGGAAGAGAGCCGCGGCTGCCGGCG
ACATCGACGAGGTGGTTATCGGTGGGGAGGCGAGGCGGAGGCCCAGGTTCCGGTCGCTGGCGGCGGTGTACAGGGAGACG
AGGAGACCGAACGACCACGTCGTCGTCGTCGTCGCCGGGGCGGCCGAGGAGGATGGCGAGAGGACGACGACGACGACGAC
GACGAAGAGGGCGGCGAACGACGCGGCGGTGGCCGGCAAGGGAAGAAGAACACAAGTTCACAACATTGGGGGAAAGAGAG
GCCTAAGCTACGCAGACACGACTTTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4538.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis