Browse Element(s) Details


OsAffx.27195.1.S1_at

Description tigr:9633.m03367
TID=OsAffx.27195.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3611011/11membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g36090Os.23220.1.S1_at11/115+21305604..21309490DHHC zinc finger domain containing protein, expressed
LOC_Os05g36100OsAffx.14982.1.S1_at11/115+21321505..21325846AP2 domain containing protein
LOC_Os05g36110OsAffx.27195.1.S1_at11/115+21326971..21331165membrane protein, putative, expressed
LOC_Os05g36110Os.14845.1.S1_at11/115+21326971..21331165membrane protein, putative, expressed
LOC_Os05g36120Os.17654.1.S1_at11/115+21331840..21337553Polypyrimidine tract-binding protein homolog 3, putative, expressed
LOC_Os05g36130NANA5+21338235..21338601transposon protein, putative, unclassified
LOC_Os05g36140OsAffx.4538.1.S1_at11/115+21341864..21342823expressed protein
LOC_Os05g36150Os.54273.1.S1_at11/115+21344587..21348401integral membrane Yip1 family protein, putative, expressed
LOC_Os05g36160Os.37925.1.S1_a_at11/115+21349271..21352496bZIP transcription factor family protein, expressed
LOC_Os05g36160Os.411.2.S1_x_at1/115+21349271..21352496bZIP transcription factor family protein, expressed
LOC_Os05g36170Os.6227.2.S1_x_at1/115+21355514..21361669retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0010222biological_processstem vascular tissue pattern formation
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27195.1.S1_at--1008--3371Chr05:21329806..21329830 (25 bp)
CAGCCTACACCTGCCTAGATGATTA
LOC_Os05g36110
OsAffx.27195.1.S1_at--908--10031Chr05:21329821..21329845 (25 bp)
TAGATGATTACCTCCAGATGCCTCA
LOC_Os05g36110
OsAffx.27195.1.S1_at--361--3511Chr05:21329848..21329872 (25 bp)
CATGTATAACTTCCTTGCTTAGCTT
LOC_Os05g36110
OsAffx.27195.1.S1_at--888--10451Chr05:21329866..21329890 (25 bp)
TTAGCTTAGCTGACTCCGAGAAACT
LOC_Os05g36110
OsAffx.27195.1.S1_at--808--351Chr05:21329920..21329944 (25 bp)
ATAAGCATGTGTTCGGTTGCTCCTT
LOC_Os05g36110
OsAffx.27195.1.S1_at--709--3671Chr05:21329942..21329966 (25 bp)
CTTTTCTGTGTTTCCTTGTTTCTAG
LOC_Os05g36110
OsAffx.27195.1.S1_at--1062--6831Chr05:21329959..21329983 (25 bp)
GTTTCTAGAATAGTTCCCTCACTTT
LOC_Os05g36110
OsAffx.27195.1.S1_at--760--9852Chr05:21330045..21330069 (25 bp)
TACAAAACCTTGCTTGGCCTTATCT
LOC_Os05g36110
OsAffx.27195.1.S1_at--175--8431Chr05:21330060..21330084 (25 bp)
GGCCTTATCTTATTAGCTGACTATT
LOC_Os05g36110
OsAffx.27195.1.S1_at--50--2571Chr05:21330189..21330213 (25 bp)
AACTGATGCCTTCGACTTTTTAGAA
LOC_Os05g36110
OsAffx.27195.1.S1_at--858--891Chr05:21330286..21330310 (25 bp)
AGGCCCATATTTTGTTGCTCTGTGC
LOC_Os05g36110
Target Sequence 
CAGCCTACACCTGCCTAGATGATTACCTCCAGATGCCTCATTCATGTATAACTTCCTTGCTTAGCTTAGCTGACTCCGAG
AAACTTTTTGAATGTTTTTAATTTGTTGATTTTCATAAGCATGTGTTCGGTTGCTCCTTTTCTGTGTTTCCTTGTTTCTA
GAATAGTTCCCTCACTTTGAGGGAAGTGGCAACGATTAGTTATGTTCATCTGAGTCAAAATAATGGTCACAAGAAATTTT
ACAAAACCTTGCTTGGCCTTATCTTATTAGCTGACTATTGAACTTAGAGATTATACTAGAAGATAGCTTACTAAAGATTT
GCTAGTAGACCTATGCAAGGCCAAACAGCAACACAAAGCAAACATTTGCAGTCGGAACAGTGAAACTGATGCCTTCGACT
TTTTAGAAATTGGTGTACATTTTGATTTAGCAAGCAGCACAACAAATACTGTACTTGGTTACATATTAATTATATTACAG
AGGCCCATATTTTGTTGCTCTGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27195.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis