Browse Element(s) Details


OsAffx.14982.1.S1_at

Description tigr:9633.m03366
TID=OsAffx.14982.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3610011/11AP2 domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g36080Os.43567.1.S1_x_at3/115+21294736..21299522transposon protein, putative, unclassified
LOC_Os05g36080Os.53217.1.S1_x_at3/115+21294736..21299522transposon protein, putative, unclassified
LOC_Os05g36080Os.38172.1.S1_x_at3/115+21294736..21299522transposon protein, putative, unclassified
LOC_Os05g36090Os.23220.1.S1_at11/115+21305604..21309490DHHC zinc finger domain containing protein, expressed
LOC_Os05g36100OsAffx.14982.1.S1_at11/115+21321505..21325846AP2 domain containing protein
LOC_Os05g36110OsAffx.27195.1.S1_at11/115+21326971..21331165membrane protein, putative, expressed
LOC_Os05g36110Os.14845.1.S1_at11/115+21326971..21331165membrane protein, putative, expressed
LOC_Os05g36120Os.17654.1.S1_at11/115+21331840..21337553Polypyrimidine tract-binding protein homolog 3, putative, expressed
LOC_Os05g36130NANA5+21338235..21338601transposon protein, putative, unclassified
LOC_Os05g36140OsAffx.4538.1.S1_at11/115+21341864..21342823expressed protein
LOC_Os05g36150Os.54273.1.S1_at11/115+21344587..21348401integral membrane Yip1 family protein, putative, expressed
LOC_Os05g36160Os.37925.1.S1_a_at11/115+21349271..21352496bZIP transcription factor family protein, expressed
LOC_Os05g36160Os.411.2.S1_x_at1/115+21349271..21352496bZIP transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14982.1.S1_at--568--1651Chr05:21325502..21325526 (25 bp)
AGCGCGGTCTCGGACTACTTGCAGT
LOC_Os05g36100
OsAffx.14982.1.S1_at--58--7171Chr05:21325508..21325532 (25 bp)
GTCTCGGACTACTTGCAGTACCAGA
LOC_Os05g36100
OsAffx.14982.1.S1_at--267--9891Chr05:21325517..21325541 (25 bp)
TACTTGCAGTACCAGATGCTCCTAC
LOC_Os05g36100
OsAffx.14982.1.S1_at--686--6971Chr05:21325525..21325549 (25 bp)
GTACCAGATGCTCCTACACGGAGGA
LOC_Os05g36100
OsAffx.14982.1.S1_at--327--4011Chr05:21325568..21325592 (25 bp)
CGTTATCCTCTCTACTACGGCGGCG
LOC_Os05g36100
OsAffx.14982.1.S1_at--970--4511Chr05:21325598..21325622 (25 bp)
GCCGCTGCCATGAGTAGCTCTTTGG
LOC_Os05g36100
OsAffx.14982.1.S1_at--146--7131Chr05:21325693..21325717 (25 bp)
GTCTTCTTCGGGTTACGGCGCGCCG
LOC_Os05g36100
OsAffx.14982.1.S1_at--1024--4991Chr05:21325738..21325762 (25 bp)
GCAGTGGACCAGCTGGCCGGACGGT
LOC_Os05g36100
OsAffx.14982.1.S1_at--191--7531Chr05:21325764..21325788 (25 bp)
GTGGCTGGACCTATCCGGCGACGAC
LOC_Os05g36100
OsAffx.14982.1.S1_at--861--1851Chr05:21325784..21325808 (25 bp)
ACGACGAGTTCTTGGTCTGGTTCGA
LOC_Os05g36100
OsAffx.14982.1.S1_at--672--10551Chr05:21325792..21325816 (25 bp)
TTCTTGGTCTGGTTCGAGCCAGTAC
LOC_Os05g36100
Target Sequence 
AGCGCGGTCTCGGACTACTTGCAGTACCAGATGCTCCTACACGGAGGAGGCGGCGGCGGCGGCGGCCGTTATCCTCTCTA
CTACGGCGGCGGCGCCGCCGCTGCCATGAGTAGCTCTTTGGGGCCTTACTCCTCCATCCCCACCTCCTCGGTCACCGTCG
CCTCCGTGCCGTCGTCGTCCTCTGCCGCGTCGTCTTCTTCGGGTTACGGCGCGCCGGCGGAGCACGGCGAGGCGGTGCAG
TGGACCAGCTGGCCGGACGGTGGTGGCTGGACCTATCCGGCGACGACGAGTTCTTGGTCTGGTTCGAGCCAGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14982.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis