Browse Element(s) Details


Os.54273.1.S1_at

Description gb:AK102974.1
DB_XREF= gi:32988183
TID=Os.54273.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54273 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033115K22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033115K22, full insert sequence.
FL= gb:AK102974.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3615011/11integral membrane Yip1 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g36100OsAffx.14982.1.S1_at11/115+21321505..21325846AP2 domain containing protein
LOC_Os05g36110OsAffx.27195.1.S1_at11/115+21326971..21331165membrane protein, putative, expressed
LOC_Os05g36110Os.14845.1.S1_at11/115+21326971..21331165membrane protein, putative, expressed
LOC_Os05g36120Os.17654.1.S1_at11/115+21331840..21337553Polypyrimidine tract-binding protein homolog 3, putative, expressed
LOC_Os05g36130NANA5+21338235..21338601transposon protein, putative, unclassified
LOC_Os05g36140OsAffx.4538.1.S1_at11/115+21341864..21342823expressed protein
LOC_Os05g36150Os.54273.1.S1_at11/115+21344587..21348401integral membrane Yip1 family protein, putative, expressed
LOC_Os05g36160Os.37925.1.S1_a_at11/115+21349271..21352496bZIP transcription factor family protein, expressed
LOC_Os05g36160Os.411.2.S1_x_at1/115+21349271..21352496bZIP transcription factor family protein, expressed
LOC_Os05g36170Os.6227.2.S1_x_at1/115+21355514..21361669retrotransposon protein, putative, unclassified
LOC_Os05g36180NANA5+21362297..21365438retrotransposon protein, putative, unclassified
LOC_Os05g36184NANA5+21368562..21372649expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54273.1.S1_at--928--4771Chr05:21345121..21345145 (25 bp)
GCTGCTGGTGCTATAATTCTCACAT
LOC_Os05g36150
Os.54273.1.S1_at--1032--2071Chr05:21345103..21345124 (22 bp)
ACATTGAATGTGCTGCTCCTGGGTG
LOC_Os05g36150
Os.54273.1.S1_at--567--5871Chr05:21344953..21344977 (25 bp)
GAGCCTGAGTCTTCTTGGATACTGC
LOC_Os05g36150
Os.54273.1.S1_at--298--8571Chr05:21344938..21344962 (25 bp)
TGGATACTGCCTGTTCCCTTTGGAT
LOC_Os05g36150
Os.54273.1.S1_at--381--4191Chr05:21344923..21344947 (25 bp)
CCCTTTGGATGTCGGAGCTTTGATT
LOC_Os05g36150
Os.54273.1.S1_at--409--1091Chr05:21344857..21344881 (25 bp)
AGTGGTTACATTGGCCTGGAGCTCC
LOC_Os05g36150
Os.54273.1.S1_at--536--751Chr05:21344757..21344781 (25 bp)
ATGTACGTCTCTGTTGGGTTCCTCA
LOC_Os05g36150
Os.54273.1.S1_at--929--7671Chr05:21344742..21344766 (25 bp)
GGGTTCCTCATCATCGCAATAGATT
LOC_Os05g36150
Os.54273.1.S1_at--517--7231Chr05:21344705..21344729 (25 bp)
GTCGCTATGCTACTAATCCTGAGTT
LOC_Os05g36150
Os.54273.1.S1_at--951--8871Chr05:21344686..21344710 (25 bp)
TGAGTTTTGTTTCCCGTTTGAGCAT
LOC_Os05g36150
Os.54273.1.S1_at--448--10051Chr05:21344644..21344668 (25 bp)
TAGTTACACGTTCCTGTTGTCGTTG
LOC_Os05g36150
Target Sequence 
GCTGCTGGTGCTATAATTCTCACATTGAATGTGCTGCTCCTGGGTGGGCGCATCAACTTCTTTCAGAGCCTGAGTCTTCT
TGGATACTGCCTGTTCCCTTTGGATGTCGGAGCTTTGATTTGCATGCTGAAGGATAATGTACTACTGAAGATCATTGCAG
TAGTGGTTACATTGGCCTGGAGCTCCTGGGCAGCATATCCATTCATGAGTGCTGCTGTTAACCCAAGGAGAAAGGCGTTG
GCACTATATCCTGTCTTCCTTATGTACGTCTCTGTTGGGTTCCTCATCATCGCAATAGATTAAGGGCGGAATAGTCGCTA
TGCTACTAATCCTGAGTTTTGTTTCCCGTTTGAGCATCATAATTCATACAGAATTAGTTACACGTTCCTGTTGTCGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54273.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis