Browse Element(s) Details


Os.15264.1.S1_at

Description gb:AK099062.1
DB_XREF= gi:32984271
TID=Os.15264.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15264 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013153E21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013153E21, full insert sequence.
FL= gb:AK065742.1 gb:AK099062.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0812011/11ETO1-like protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08080OsAffx.28340.4.S1_at11/117+4091235..4092423expressed protein
LOC_Os07g08090OsAffx.28340.1.S1_at11/117+4099166..4102756hypothetical protein
LOC_Os07g08090OsAffx.28340.1.S1_x_at11/117+4099166..4102756hypothetical protein
LOC_Os07g08090OsAffx.28340.4.S1_at1/117+4099166..4102756hypothetical protein
LOC_Os07g08100OsAffx.5250.1.S1_at11/117+4104836..4105876hypothetical protein
LOC_Os07g08120Os.15264.1.S1_at11/117+4116736..4121887ETO1-like protein 1, putative, expressed
LOC_Os07g08129NANA7+4123125..4123649NA
LOC_Os07g08140Os.18587.1.S1_at11/117+4137460..4140736Heat shock factor protein HSF30, putative, expressed
LOC_Os07g08150OsAffx.24280.2.S1_at11/117+4141640..4142873early light-inducible protein ELIP, putative, expressed
LOC_Os07g08150Os.57519.1.S1_x_at3/117+4141640..4142873early light-inducible protein ELIP, putative, expressed
LOC_Os07g08160Os.57519.1.S1_x_at1/117+4144214..4145153Early light-induced protein, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15264.1.S1_at--667--2371Chr07:4121383..4121407 (25 bp)
AAACGCGTGAACAGCCAAGAGCCCT
LOC_Os07g08120
Os.15264.1.S1_at--1063--7491Chr07:4121419..4121443 (25 bp)
GTGGTGCCACTTGGTGCATTGCATA
LOC_Os07g08120
Os.15264.1.S1_at--975--6531Chr07:4121448..4121472 (25 bp)
GATTTTTGCGCTCATAGGTGCGCCT
LOC_Os07g08120
Os.15264.1.S1_at--172--3631Chr07:4121483..4121507 (25 bp)
CTTGACTCCATCCAATTTTCTTCAT
LOC_Os07g08120
Os.15264.1.S1_at--694--1491Chr07:4121560..4121584 (25 bp)
AGCACTAGTTCTTTGGAAGCCATCA
LOC_Os07g08120
Os.15264.1.S1_at--822--10011Chr07:4121596..4121620 (25 bp)
TAGCACTCGATGACTGCTGGCTTTT
LOC_Os07g08120
Os.15264.1.S1_at--774--371Chr07:4121637..4121661 (25 bp)
ATCACTGAACTGTTGTCTCCTGGAA
LOC_Os07g08120
Os.15264.1.S1_at--69--711Chr07:4121678..4121702 (25 bp)
ATGATGTAACTTTCAGGCCCCTATT
LOC_Os07g08120
Os.15264.1.S1_at--754--3571Chr07:4121751..4121775 (25 bp)
CATTTTAGACCTACTTTACCTGTGG
LOC_Os07g08120
Os.15264.1.S1_at--208--9491Chr07:4121842..4121866 (25 bp)
TCTGCTTTCCCTTCAGAGTAAAGTA
LOC_Os07g08120
Os.15264.1.S1_at--763--1171Chr07:4121863..4121887 (25 bp)
AGTACAGCTTGGTTGCACTTGCAGC
LOC_Os07g08120
Target Sequence 
AAACGCGTGAACAGCCAAGAGCCCTAACAAAAAATTGTGGTGCCACTTGGTGCATTGCATACCATGATTTTTGCGCTCAT
AGGTGCGCCTCATGACAGCCCTTGACTCCATCCAATTTTCTTCATTTCTTTGTTAATTACTGTAATATGATGTATTCAGC
AAGAAAGGAAAAATGAAAGCACTAGTTCTTTGGAAGCCATCATCGATGAATCTTAGCACTCGATGACTGCTGGCTTTTGT
AAAAGTAATGCCTAATCACTGAACTGTTGTCTCCTGGAAATGAAAATCACCGTGCATGATGTAACTTTCAGGCCCCTATT
TTAGCTCCCAATTTTTTCTGTAATGAACNTTGCATGCAAATTTTGCNCCATTTTAGACCTACTTTACCTGTGGGTTTTAC
AGTCNNNANANNNNGTATTAACATGTGTAAATGACGCGTCCATTATATTTAGGGGAGTTTCTGCTTTCCCTTCAGAGTAA
AGTACAGCTTGGTTGCACTTGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15264.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis