Browse Element(s) Details


Os.15298.1.S1_at

Description gb:AK065474.1
DB_XREF= gi:32975492
TID=Os.15298.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15298 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033100G21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013023F11, full insert sequence.
FL= gb:AK102644.1 gb:AK061751.1 gb:AK065474.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1999011/11WD40-like Beta Propeller Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19970Os.22909.1.S1_at10/113+11221095..11226313O-acetyltransferase, putative, expressed
LOC_Os03g19980Os.24159.1.S1_at11/113+11231175..11234138pentatricopeptide, putative, expressed
LOC_Os03g19980Os.14563.1.S1_at1/113+11231175..11234138pentatricopeptide, putative, expressed
LOC_Os03g19990Os.15298.1.S1_at11/113+11245654..11248931WD40-like Beta Propeller Repeat family protein, expressed
LOC_Os03g19990Os.49781.1.S1_x_at1/113+11245654..11248931WD40-like Beta Propeller Repeat family protein, expressed
LOC_Os03g20000OsAffx.25154.1.S1_at11/113+11249630..11249935hypothetical protein
LOC_Os03g20010Os.52775.1.S1_at11/113+11250689..11252043NifU-like domain containing protein, expressed
LOC_Os03g20020Os.32659.1.S1_at11/113+11262173..11266726beta-fructofuranosidase, putative, expressed
LOC_Os03g20040NANA3+11273756..11275890hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15298.1.S1_at--780--8071Chr03:11248360..11248384 (25 bp)
GGAGCATCGCGGTGACGTCCGACCT
LOC_Os03g19990
Os.15298.1.S1_at--353--1811Chr03:11248471..11248495 (25 bp)
ACCCGGACGACATGGCGAGGAACGA
LOC_Os03g19990
Os.15298.1.S1_at--708--631Chr03:11248668..11248692 (25 bp)
ATGACCGGCCAGATTTGCATCCCCA
LOC_Os03g19990
Os.15298.1.S1_at--459--211Chr03:11248680..11248704 (25 bp)
ATTTGCATCCCCAAAAGGCACTGTT
LOC_Os03g19990
Os.15298.1.S1_at--530--4171Chr03:11248713..11248737 (25 bp)
CGCCATTGCATTACTACGTTTCTTG
LOC_Os03g19990
Os.15298.1.S1_at--1025--3711Chr03:11248726..11248750 (25 bp)
CTACGTTTCTTGTTTAGAAGCGTTG
LOC_Os03g19990
Os.15298.1.S1_at--391--5351Chr03:11248782..11248806 (25 bp)
GAAGACGTTTTCAGCATTTGCTTGG
LOC_Os03g19990
Os.15298.1.S1_at--529--211Chr03:11248797..11248821 (25 bp)
ATTTGCTTGGATGTACAACGTGTGT
LOC_Os03g19990
Os.15298.1.S1_at--1006--3251Chr03:11248812..11248836 (25 bp)
CAACGTGTGTATGAACTGTTTGCGA
LOC_Os03g19990
Os.15298.1.S1_at--422--6031Chr03:11248859..11248883 (25 bp)
GAGATGTACTTTTTTCTTGTCAGTA
LOC_Os03g19990
Os.15298.1.S1_at--710--3611Chr03:11248874..11248898 (25 bp)
CTTGTCAGTAAGACTTTTGCATAAA
LOC_Os03g19990
Target Sequence 
GGAGCATCGCGGTGACGTCCGACCTCGCCGCGGTGACCGCCGACCCGATGTCGCTGCCGCTCTTCCTGCACTCCGTCAGG
CCCTACGGCGACATCTTCACCGTGGACATCGACCCGGACGACATGGCGAGGAACGAGGACGTGGAGGGGTTCGTCCGCGT
CACGCACAGCCGGTACGAGAACTCCACGCCGGCGTGGACCGTGTTCTCCACGCACGACCCGCACGCGCAGTGGAACCTCC
TCGTCGTGGAGGACGAGCACGTCCCGTCGTGCCCGTACGCGCATCCGGACGGAGGCGAGAGTTGGCACATGACCGGCCAG
ATTTGCATCCCCAAAAGGCACTGTTAATTCTCTCGCCATTGCATTACTACGTTTCTTGTTTAGAAGCGTTGTTGTTTGTT
TAACGTACGATATTTATTATCTGAAGACGTTTTCAGCATTTGCTTGGATGTACAACGTGTGTATGAACTGTTTGCGATGT
AATATTTGTTTATTTGCTTGAGATGTACTTTTTTCTTGTCAGTAAGACTTTTGCATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15298.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis