Browse Element(s) Details


Os.15310.1.S1_at

Description gb:AK103571.1
DB_XREF= gi:32988780
TID=Os.15310.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15310 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033132N07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033132N07, full insert sequence.
FL= gb:AK103571.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0389010/11Nuclear transport factor 2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03840Os.17347.1.S1_at11/112+1617326..1630163expressed protein
LOC_Os02g03840Os.17347.1.S2_at11/112+1617326..1630163expressed protein
LOC_Os02g03840Os.21055.1.A1_at4/112+1617326..1630163expressed protein
LOC_Os02g03850Os.49187.1.S1_at11/112+1631971..1636772Glycosyl transferase family, a/b domain containing protein, expressed
LOC_Os02g03860Os.8662.1.S1_at11/112+1637581..1641852ATP synthase 24 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os02g03870OsAffx.24089.1.S1_x_at11/112+1643997..1648808Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os02g03880NANA2+1650809..1651178Mitochondrial import receptor subunit TOM22 homolog, putative, expressed
LOC_Os02g03890Os.15310.1.S1_at10/112+1652080..1655123Nuclear transport factor 2 domain containing protein, expressed
LOC_Os02g03900Os.54147.1.S1_at11/112+1658576..1662644NRAMP family Mn2+/Fe2+ transporters containing protein, expressed
LOC_Os02g03910OsAffx.24088.2.S1_at11/112+1664217..1665802F-box domain containing protein
LOC_Os02g03920NANA2+1666678..1667007hypothetical protein
LOC_Os02g03930OsAffx.11882.1.S1_at11/112+1667744..1672318pentatricopeptide, putative, expressed
LOC_Os02g03940OsAffx.11883.1.S1_at11/112+1672931..1676493expressed protein
LOC_Os02g03940Os.15568.1.S1_at10/112+1672931..1676493expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006913biological_processnucleocytoplasmic transport
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15310.1.S1_at--698--6251Chr02:1653122..1653146 (25 bp)
GATGGTGTTGCTATCAGAAGCCGCA
LOC_Os02g03890
Os.15310.1.S1_at--403--5991Chr02:1653017..1653041 (25 bp)
GAGACCGGAGGCTACTATGCGTTCG
LOC_Os02g03890
Os.15310.1.S1_at--528--8311Chr02:1653008..1653032 (25 bp)
GGCTACTATGCGTTCGTGGAATTCG
LOC_Os02g03890
Os.15310.1.S1_at--468--6751Chr02:1652727..1652993 (25 bp)
GTTCACAATGCATTGAAGGCTTCAC
LOC_Os02g03890
Os.15310.1.S1_at--381--8091Chr02:1652668..1652692 (25 bp)
GGAGCGGAAGCCTAACAGCGGCATA
LOC_Os02g03890
Os.15310.1.S1_at--442--7531Chr02:1652411..1652435 (25 bp)
GTGGCAGGCCATCAAATGGCTACCA
LOC_Os02g03890
Os.15310.1.S1_at--879--8071Chr02:1652354..1652378 (25 bp)
GGAGCCACAACGCAAGAAACTAAAT
LOC_Os02g03890
Os.15310.1.S1_at--642--9011Chr02:1652285..1652309 (25 bp)
TGCAAGCATGAGGTTTTGATCCGTC
LOC_Os02g03890
Os.15310.1.S1_at--842--7631Chr02:1652252..1652276 (25 bp)
GGGAGAGCTGCATAACTAAGAACTA
LOC_Os02g03890
Os.15310.1.S1_at--557--8311Chr02:1652126..1652150 (25 bp)
GGCTAGACGTTTTATTATGATGCAA
LOC_Os02g03890
Os.15310.1.S1_at--822--10111NONE
TATGATGCAAATGCCCGTCCCTTGA
NONE
Target Sequence 
GATGGTGTTGCTATCAGAAGCCGCAAGGAGACCGGAGGCTACTATGCGTTCGTGGAATTCGAAGAACTTAGTGGTGTTCA
CAATGCATTGAAGGCTTCACCAATTGAAATAAATGGGCGGCAGATATATGTTGAGGAGCGGAAGCCTAACAGCGGCATAA
GAGGTGGAAGAAGGGGAGGCAGAGGTCGTTTCGGTGGAGGAGGGCGAGGGTATGCTAGAGGGGGAGGCGACAACGAATAT
GCNGGCAACCGNTGGTAGTGGCAGGCCATCAAATGGCTACCAGCGTGTTCCTCACCNATGAGAGGGGCATTTTGGGGAGC
CACAACGCAAGAAACTAAATGGTTCACCACCCCNANTGGTGGTGGCCTGGTGGGATATGCATATGCTGCAAGCATGAGGT
TTTGATCCGTCNAAAGGGAGGGAGAGCTGCATAACTAAGAACTACTGGGTTGTTTCCTCCGTTCCGTTAGGTTGCTTTTT
TTTTTTGGNTTTTGGGTTTTGTCGCAGCAGCNAGTTTGTTGACGAAGAATGTGTGGTATCCNACTTTGGCTAGACGTTTT
ATTATGATGCAAATGCCCGTCCCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15310.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis