Browse Element(s) Details


Os.15417.1.S1_at

Description gb:AK067538.1
DB_XREF= gi:32977556
TID=Os.15417.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15417 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013110G24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013110G24, full insert sequence.
FL= gb:AK067538.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g508009/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50770Os.54485.1.S1_at2/115+29036431..29038295C4-dicarboxylate transporter/malic acid transport family protein, putative
LOC_Os05g50770Os.5608.3.S1_x_at1/115+29036431..29038295C4-dicarboxylate transporter/malic acid transport family protein, putative
LOC_Os05g50780OsAffx.15186.1.S1_at11/115+29046079..29048554Leucine Rich Repeat family protein
LOC_Os05g50790OsAffx.27396.1.S1_at11/115+29048775..29051796hypothetical protein
LOC_Os05g50800Os.15417.1.S1_at9/115+29054191..29056893expressed protein
LOC_Os05g50810Os.12678.1.S1_at11/115+29057230..29061250Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os05g50820Os.8034.1.S1_at11/115+29066820..29068992expressed protein
LOC_Os05g50830Os.54914.1.S1_at11/115+29071353..29073616Protein kinase domain containing protein, expressed
LOC_Os05g50830OsAffx.27515.1.S1_x_at1/115+29071353..29073616Protein kinase domain containing protein, expressed
LOC_Os05g50840Os.12128.1.S1_at11/115+29073640..29078396Mitochondrial carrier protein, expressed
LOC_Os05g50850NANA5+29080826..29081838hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0010090biological_processtrichome morphogenesis (sensu Magnoliophyta)
GO:0045010biological_processactin nucleation
GO:0031209cellular_componentSCAR complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15417.1.S1_at--77--831NONE
ATGGTTCCATGTACCTTCTAGGCAA
NONE
Os.15417.1.S1_at--785--10091Chr05:29056221..29056244 (24 bp)
TAGGCAAGGACATACCTGCTTCTCC
LOC_Os05g50800
Os.15417.1.S1_at--675--2211Chr05:29056250..29056274 (25 bp)
ACAAGCCTCTGCAACCGAATGGGAA
LOC_Os05g50800
Os.15417.1.S1_at--1021--1671Chr05:29056483..29056507 (25 bp)
AGCCTGGTTTCATGCATATGTCGAC
LOC_Os05g50800
Os.15417.1.S1_at--210--10011Chr05:29056576..29056600 (25 bp)
TAGCTACCCTCTTTATCAAGCACAA
LOC_Os05g50800
Os.15417.1.S1_at--572--9631Chr05:29056623..29056647 (25 bp)
TCAGTTCGATGATTAGTTCCCGTTT
LOC_Os05g50800
Os.15417.1.S1_at--297--7451Chr05:29056739..29056763 (25 bp)
GTGTCAATTTTTCAGGTCAGCATCA
LOC_Os05g50800
Os.15417.1.S1_at--24--6951Chr05:29056793..29056817 (25 bp)
GTAGTAATTCTGCATCAGCGCCCAA
LOC_Os05g50800
Os.15417.1.S1_at--782--4551Chr05:29056812..29056836 (25 bp)
GCCCAATCAGTTCCATGTTGTTGCT
LOC_Os05g50800
Os.15417.1.S1_at--1121--10691Chr05:29056832..29056856 (25 bp)
TTGCTGTGCTATTCTGCTTCTAAGA
LOC_Os05g50800
Os.15417.1.S1_at--392--9451NONE
TCGGCTCCCACCAGACAATAAAATT
NONE
Target Sequence 
ATGGTTCCATGTACCTTCTAGGCAAGGACATACCTGCTTCTCCCATGCACAAGCCTCTGCAACCGAATGGGAACACCAGT
TTTGATGCTAAGAAAAATGTTGGTTCAAAGGACCAGCCTGGTTTCATGCATATGTCGACATTTAATGCATTGGACAAACN
TAGAGGGCGTGAAATCCAAAAGGTTCCAGTTAGCACTAAAAGCATGCTAGCTACCCTCTTTATCAAGCACAAGTCAGCAA
AGACGAGAAAGGCCTCAGTTCGATGATTAGTTCCCGTTTGTGTGTGTGAAGTGATATCACTGTAAAGTTCAAGCAAGAGG
CTTATTGTAAATCTGATTTTCNCTTGTNCNGGTTTAGAGCTGAATGTGTANGTGTCAATTTTTCAGGTCAGCATCAGTGG
TGCCATTNCTGTTGATGAACAAAATGTAGTAATTCTGCATCAGCGCCCAATCAGTTCCATGTTGTTGCTGTGCTATTCTG
CTTCTAAGAACCTCGGCTCCCACCAGACAATAAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15417.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis