Browse Element(s) Details

Os.15454.1.S1_x_at

Description

gb:AK072504.1
DB_XREF= gi:32982527
TID=Os.15454.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15454 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023125E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023125E09, full insert sequence.
FL= gb:AK069245.1 gb:AK072504.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g06760	11/11	U-box domain containing protein, expressed
LOC_Os06g14470	1/11	DIP2 protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g06730	Os.47447.1.S1_at	11/11	6	+	3153275..3157429	early nodule-specific-like protein ENOD8 gene, putative, expressed
LOC_Os06g06730	OsAffx.10342.1.S1_x_at	2/11	6	+	3153275..3157429	early nodule-specific-like protein ENOD8 gene, putative, expressed
LOC_Os06g06740	OsAffx.27479.1.S1_at	11/11	6	+	3159101..3161401	Myb-like DNA-binding domain containing protein
LOC_Os06g06750	Os.4367.1.S1_at	11/11	6	+	3161815..3168414	Agamous-like MADS box protein AGL9 homolog, putative, expressed
LOC_Os06g06760	Os.15454.1.S2_x_at	11/11	6	+	3174807..3180712	U-box domain containing protein, expressed
LOC_Os06g06760	Os.15454.2.S1_at	11/11	6	+	3174807..3180712	U-box domain containing protein, expressed
LOC_Os06g06760	Os.15454.1.S1_x_at	11/11	6	+	3174807..3180712	U-box domain containing protein, expressed
LOC_Os06g06760	Os.44751.1.S1_at	10/11	6	+	3174807..3180712	U-box domain containing protein, expressed
LOC_Os06g06770	Os.7823.1.S1_at	11/11	6	+	3185351..3190478	expressed protein
LOC_Os06g06770	Os.44749.1.S1_at	11/11	6	+	3185351..3190478	expressed protein
LOC_Os06g06770	Os.44749.1.S1_x_at	10/11	6	+	3185351..3190478	expressed protein
LOC_Os06g06780	Os.4370.1.S1_at	11/11	6	+	3194613..3198003	Harpin-induced protein 1 containing protein, expressed
LOC_Os06g06780	Os.4370.2.S1_x_at	10/11	6	+	3194613..3198003	Harpin-induced protein 1 containing protein, expressed
LOC_Os06g06790	Os.4371.1.S1_a_at	10/11	6	+	3198377..3202919	protein disulfide isomerase, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.15454.1.S1_x_at--386--615	2	Chr06:3177779..3177803 (25 bp)	GAGGTCACCGTGGAACTTCAGAGAG	LOC_Os06g06760
Os.15454.1.S1_x_at--436--1009	1	Chr06:3177730..3177754 (25 bp)	TAGGTCAACTCTCAGACTCCAGAGA	LOC_Os06g06760
Os.15454.1.S1_x_at--682--529	1	Chr06:3177698..3177722 (25 bp)	GAATGGCTTCTATCTGAGCATGACC	LOC_Os06g06760
Os.15454.1.S1_x_at--179--69	1	Chr06:3177679..3177703 (25 bp)	ATGACCAATTGCTACGTGAACGAGA	LOC_Os06g06760
Os.15454.1.S1_x_at--784--1053	1	Chr06:3177603..3177627 (25 bp)	TTCAGTTTTGGTTACAGCGATGCAC	LOC_Os06g06760
Os.15454.1.S1_x_at--562--691	1	Chr06:3177484..3177508 (25 bp)	GTATCCTCCGGAACATGACAGTTGC	LOC_Os06g06760
Os.15454.1.S1_x_at--1146--681	1	Chr06:3177436..3177460 (25 bp)	GTTTACAGGGACAATCACAGTTCGA	LOC_Os06g06760
Os.15454.1.S1_x_at--945--173	1	Chr06:3177243..3177267 (25 bp)	ACCTTGTGACTCTCTTAGGAGCTTG	LOC_Os06g06760
Os.15454.1.S1_x_at--732--807	1	Chr06:3177226..3177250 (25 bp)	GGAGCTTGCTCAGAGTCTTCAACAC	LOC_Os06g06760
Os.15454.1.S1_x_at--271--379	1	Chr06:3177202..3177226 (25 bp)	CTCGTATACGAGTTCCTGCCAAATG	LOC_Os06g06760
Os.15454.1.S1_x_at--716--575	1	Chr06:3177131..3177155 (25 bp)	GACGTGGCAGGCTCGGATTCGAATT	LOC_Os06g06760

Target Sequence

GAGGTCACCGTGGAACTTCAGAGAGTCAATGAGCAGAATGAGAATCTACTAGGTCAACTCTCAGACTCCAGAGAGCATTT
TGAATGGCTTCTATCTGAGCATGACCAATTGCTACGTGAACGAGATAATGCAGTTCGAGAGGTTGAAGAACTACGTCAGA
AAAGAGGACAGATGCTTTCAGTTTTGGTTACAGCGATGCACTGTGAATTTTCATCATCTGAAGTGGAATCTGCAACAGAA
AATTTTAGTAATTCATTGAAGATTGGAGAAGGTGGGTTTGGCTGCGTATACAAAGGTATCCTCCGGAACATGACAGTTGC
AATAAAGGTGCTGAGACCTGATAGTTTACAGGGACAATCACAGTTCGAACAAGAGGTTTCTATCCTCAGTAGAGTGAGAC
ACCCTCACCTTGTGACTCTCTTAGGAGCTTGCTCAGAGTCTTCAACACTCGTATACGAGTTCCTGCCAAATGGAAGCCTA
GAAGATTTTCTTATGTGTTCAGATAAGAGGCAAACTCTGACGTGGCAGGCTCGGATTCGAATT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis