Browse Element(s) Details


Os.15552.2.S1_x_at

Description gb:AK066995.1
DB_XREF= gi:32977013
TID=Os.15552.2
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15552 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013089D20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089D20, full insert sequence.
FL= gb:AK066995.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3230010/11KH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32260Os.54203.1.S1_at10/119+19252877..19255544No apical meristem protein, expressed
LOC_Os09g32270Os.9485.1.S1_at11/119+19263096..19267132ribosomal protein S16 containing protein, expressed
LOC_Os09g32270Os.12229.1.S1_at11/119+19263096..19267132ribosomal protein S16 containing protein, expressed
LOC_Os09g32270OsAffx.30114.1.S1_s_at10/119+19263096..19267132ribosomal protein S16 containing protein, expressed
LOC_Os09g32280NANA9+19268294..19270022Pathogenesis-related protein 5 precursor, putative, expressed
LOC_Os09g32290Os.5601.1.S1_at11/119+19271921..19272860Sarcosine oxidase, putative, expressed
LOC_Os09g32290OsAffx.23323.1.S1_x_at1/119+19271921..19272860Sarcosine oxidase, putative, expressed
LOC_Os09g32300Os.15552.2.S1_x_at10/119+19279445..19285633KH domain containing protein, expressed
LOC_Os09g32310Os.53700.1.S1_at9/119+19286465..19289476expressed protein
LOC_Os09g32310OsAffx.6468.1.S1_x_at4/119+19286465..19289476expressed protein
LOC_Os09g32320Os.9801.1.S1_at11/119+19292346..19295663expressed protein
LOC_Os09g32330Os.8570.4.S1_at11/119+19302495..19304588expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006397biological_processmRNA processing
GO:0010093biological_processspecification of floral organ identity
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15552.2.S1_x_at--1079--6591Chr09:19285083..19285107 (25 bp)
GTTGGCTGGTCAGTTTTACGAACTC
LOC_Os09g32300
Os.15552.2.S1_x_at--634--5471Chr09:19285102..19285126 (25 bp)
GAACTCGAATTCCTTGCTGAGCTAG
LOC_Os09g32300
Os.15552.2.S1_x_at--395--5231Chr09:19285184..19285208 (25 bp)
GAATATGCAGGACATCTCACGGATG
LOC_Os09g32300
Os.15552.2.S1_x_at--1082--6211Chr09:19285237..19285261 (25 bp)
GAGGCGACGCTAGACTTTGGCATGA
LOC_Os09g32300
Os.15552.2.S1_x_at--692--8991Chr09:19285259..19285283 (25 bp)
TGAAGGTCTTCCCAGTTCCCAATGA
LOC_Os09g32300
Os.15552.2.S1_x_at--596--1671Chr09:19285301..19285325 (25 bp)
AGCCTGACATTTGTGGCATCCTGTT
LOC_Os09g32300
Os.15552.2.S1_x_at--882--3531NONE
CATCCTGTTGCTATGCTTTTTTGGT
NONE
Os.15552.2.S1_x_at--453--2991Chr09:19285345..19285369 (25 bp)
AATGTATTGCTTCCCTTGCTTTGAA
LOC_Os09g32300
Os.15552.2.S1_x_at--852--7091Chr09:19285380..19285404 (25 bp)
GTCACACGAGCTTTCTTTGATCTGA
LOC_Os09g32300
Os.15552.2.S1_x_at--810--5391Chr09:19285403..19285427 (25 bp)
GAAGCATCTCTTGCTGTCAAAGCAT
LOC_Os09g32300
Os.15552.2.S1_x_at--1038--4711Chr09:19285436..19285460 (25 bp)
GCTGGTCACCTGCTATGGCTTTTAG
LOC_Os09g32300
Target Sequence 
GTTGGCTGGTCAGTTTTACGAACTCGAATTCCTTGCTGAGCTAGAAACTTCGCATGACACAGNATAGTTTCTTGGAAACA
TAAGGAGAGCACAGGAAATTGGAATATGCAGGACATCTCACGGATGCACTCAAAATCATATATACCAATTGGCAGAGGCG
ACGCTAGACTTTGGCATGAAGGTCTTCCCAGTTCCCAATGAACTTGTAGGCAATTGCAAGCCTGACATTTGTGGCATCCT
GTTGCTATGCTTTTTTGGTTGTAATGTATTGCTTCCCTTGCTTTGAACAATGAACAAGTCACACGAGCTTTCTTTGATCT
GAAGCATCTCTTGCTGTCAAAGCATAGGTGTTGGCTGGTCACCTGCTATGGCTTTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15552.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis