Browse Element(s) Details


Os.1563.1.S1_at

Description gb:AK099241.1
DB_XREF= gi:32984450
TID=Os.1563.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.1563 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative peroxidase (B1135C02.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013116O19, full insert sequence.
FL= gb:AK068063.1 gb:AK099241.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2237011/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22336Os.1559.1.S1_x_at8/111+12533842..12539494Peroxidase family protein, expressed
LOC_Os01g22336Os.41248.4.S1_x_at3/111+12533842..12539494Peroxidase family protein, expressed
LOC_Os01g22352Os.20260.1.S1_at11/111+12546764..12552513Peroxidase family protein, expressed
LOC_Os01g22352Os.1559.1.S1_x_at2/111+12546764..12552513Peroxidase family protein, expressed
LOC_Os01g22352OsAffx.6795.1.S1_at1/111+12546764..12552513Peroxidase family protein, expressed
LOC_Os01g22352OsAffx.15945.1.S1_at1/111+12546764..12552513Peroxidase family protein, expressed
LOC_Os01g22370Os.1563.1.S1_at11/111+12560670..12564737Peroxidase family protein, expressed
LOC_Os01g22370Os.1559.1.S1_x_at1/111+12560670..12564737Peroxidase family protein, expressed
LOC_Os01g22380Os.1564.1.S1_at11/111+12565243..12565941expressed protein
LOC_Os01g22390Os.45678.1.S1_at11/111+12567308..12577242Beige/BEACH domain containing protein, expressed
LOC_Os01g22390Os.52380.2.S1_at1/111+12567308..12577242Beige/BEACH domain containing protein, expressed
LOC_Os01g22400NANA1+12578413..12579776F-box domain containing protein, expressed
LOC_Os01g22410NANA1+12582249..12585485transposon protein, putative, unclassified
LOC_Os01g22420NANA1+12586116..12592274transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1563.1.S1_at--1101--2471Chr01:12564144..12564168 (25 bp)
AACACCACGGTGGACATGGACGTGA
LOC_Os01g22370
Os.1563.1.S1_at--156--1931Chr01:12564150..12564174 (25 bp)
ACGGTGGACATGGACGTGATCACCC
LOC_Os01g22370
Os.1563.1.S1_at--988--2171Chr01:12564214..12564238 (25 bp)
ACAACCTGGGCCTCTTCACGTCGGA
LOC_Os01g22370
Os.1563.1.S1_at--828--10491Chr01:12564490..12564514 (25 bp)
TTAAGGTGGTAGTAGCTGATCTGAT
LOC_Os01g22370
Os.1563.1.S1_at--496--1611Chr01:12564503..12564527 (25 bp)
AGCTGATCTGATGTCGCGTGTTCTT
LOC_Os01g22370
Os.1563.1.S1_at--621--7231Chr01:12564515..12564539 (25 bp)
GTCGCGTGTTCTTCAGAGGTTTCAG
LOC_Os01g22370
Os.1563.1.S1_at--448--10511Chr01:12564526..12564550 (25 bp)
TTCAGAGGTTTCAGCAATAAGTTTG
LOC_Os01g22370
Os.1563.1.S1_at--182--6871Chr01:12564546..12564570 (25 bp)
GTTTGTGATCGGTGTTGTTACTTGT
LOC_Os01g22370
Os.1563.1.S1_at--840--3971Chr01:12564555..12564579 (25 bp)
CGGTGTTGTTACTTGTTAGATGTAT
LOC_Os01g22370
Os.1563.1.S1_at--718--3831Chr01:12564581..12564605 (25 bp)
CTGCTGCTGTTTTTAACGAGAATAA
LOC_Os01g22370
Os.1563.1.S1_at--982--7371Chr01:12564677..12564701 (25 bp)
GTGAGTGCTTTGGTGTGAACCTGTC
LOC_Os01g22370
Target Sequence 
AACACCACGGTGGACATGGACGTGATCACCCCGGCGGCGCTCGACAACAAGTACTACGTCGGGGTCGCCAACAACCTGGG
CCTCTTCACGTCGGACCACGCGCTGCTCACCAACGCCACGCTCAGGGCGTCGGTGGACGAGTTCGTCAAGAGCGAGACGC
GGTGGAAGAGCAAGTTCGTGAAGGCCATGGTGAAGATGGGCGGCATCGAGGTGAAGACCGGGACGACGCAGGGCGAGGTC
AGGCTCAACTGCAGGGTCGTCAACAAGAGGAGCGCCAACGCTGAGCTCGAGCTCGAGCTCGCCGCCGCCATGGATGATGG
GGATGAAGTGGCAGCGAGCTAATTAATTAAGGTGGTAGTAGCTGATCTGATGTCGCGTGTTCTTCAGAGGTTTCAGCAAT
AAGTTTGTGATCGGTGTTGTTACTTGTTAGATGTATGCTGCTGCTGTTTTTAACGAGAATAAGAGTTGCTGGAGAAGAAG
TTTTTTTCTTCTTGTTGTTTTTTAATTTGTTTTCTGTTTTGGCTTGTGTTTGGGTGAGTGCTTTGGTGTGAACCTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1563.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis