Browse Element(s) Details


Os.15674.1.S1_at

Description gb:AK099868.1
DB_XREF= gi:32985077
TID=Os.15674.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15674 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013111E20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013111E20, full insert sequence.
FL= gb:AK099868.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g318408/11TBC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31800Os.24903.1.A1_at10/118+19582695..19586834NB-ARC domain containing protein, expressed
LOC_Os08g31810Os.9309.1.S1_at11/118+19588424..19593153RNA recognition motif family protein, expressed
LOC_Os08g31820NANA8+19601879..19602343hypothetical protein
LOC_Os08g31830Os.36859.1.S1_at11/118+19602879..19606389expressed protein
LOC_Os08g31840Os.15674.1.S1_at8/118+19606824..19611657TBC domain containing protein, expressed
LOC_Os08g31850Os.6288.1.S1_at11/118+19612719..19614221expressed protein
LOC_Os08g31860Os.30528.1.S1_at11/118+19614600..19615993expressed protein
LOC_Os08g31870OsAffx.17282.1.S1_at11/118+19624234..19627960Cell division cycle protein 48 homolog, putative
LOC_Os08g31880Os.20810.2.S1_x_at1/118+19630156..19631385hypothetical protein
LOC_Os08g31890NANA8+19633324..19634571hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15674.1.S1_at--164--7811Chr08:19607708..19607732 (25 bp)
GGTCAAATTGCCTTTCGAGAAACTT
LOC_Os08g31840
Os.15674.1.S1_at--127--91Chr08:19607633..19607657 (25 bp)
ATTGCCAATTGCCTTCACATTCAAG
LOC_Os08g31840
Os.15674.1.S1_at--862--3311NONE
CACATTCAAGGTGTCTAGTCGTCTT
NONE
Os.15674.1.S1_at--114--5131NONE
GCACAAGTACTAAGCGGTCTCATCC
NONE
Os.15674.1.S1_at--890--4671Chr08:19607135..19607159 (25 bp)
GCGGTCTCATCCTCTCAAATTGAAA
LOC_Os08g31840
Os.15674.1.S1_at--110--7931Chr08:19607100..19607124 (25 bp)
GGATTGGTAGCCGTGCCTTAAGCAA
LOC_Os08g31840
Os.15674.1.S1_at--649--6091Chr08:19607031..19607055 (25 bp)
GAGTCACACCTTGTTTTATTACACT
LOC_Os08g31840
Os.15674.1.S1_at--905--3131Chr08:19606994..19607018 (25 bp)
AATTATTCGTTCATCTCTCTGTTAT
LOC_Os08g31840
Os.15674.1.S1_at--119--2831NONE
AAGTTCAACCAGTTTCCACAAGCAC
NONE
Os.15674.1.S1_at--1062--5031Chr08:19606915..19606939 (25 bp)
GCAGATGCATCGTCAACTTTGTAGT
LOC_Os08g31840
Os.15674.1.S1_at--375--3631Chr08:19606889..19606913 (25 bp)
CTTGATGTTGTTTTTCTCACGCTGA
LOC_Os08g31840
Target Sequence 
GGTCAAATTGCCTTTCGAGAAACTTCTACATGCTTTCAGAAACTTCCCAGAAGAGGCAACTGATCCTGATGTANTATTGC
CAATTGCCTTCACATTCAAGGTGTCTAGTCGTCTTGAAGAGCTGGAGAAAGAGTATCAGAAAAAATTAGAAGGATCCAAT
GCAAGCACAAGTACTAAGCGGTCTCATCCTCTCAAATTGAAAACGATGAGCAGGATTGGTAGCCGTGCCTTAAGCAACTT
TACTAATAGTGAAAAATGAGACAAATCTTGTGTTGTATAACGAGTCACACCTTGTTTTATTACACTGTAAAGAATGACAA
TTATTCGTTCATCTCTCTGTTATATTATTTTTTTTAAAAAAAAGAAAGTTCAACCAGTTTCCACAAGCACAAANGGTGCA
GATGCATCGTCAACTTTGTAGTTCTTGATGTTGTTTTTCTCACGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15674.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis