Browse Element(s) Details


Os.15706.1.S1_a_at

Description gb:AK070670.1
DB_XREF= gi:32980694
TID=Os.15706.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15706 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative phosphatidic acid phosphatase beta (P0003E08.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023057H08, full insert sequence.
FL= gb:AK070670.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4758011/11Lipid phosphate phosphatase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47570OsAffx.11507.1.S1_at11/111+27547641..27548333expressed protein
LOC_Os01g47570OsAffx.9318.1.S1_at1/111+27547641..27548333expressed protein
LOC_Os01g47580Os.15706.1.S1_at11/111+27553023..27557140Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g47580Os.15706.1.S1_a_at11/111+27553023..27557140Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g47580Os.15706.2.S1_x_at8/111+27553023..27557140Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g47600Os.52073.1.S1_at11/111+27563367..27566722HMG box family protein, expressed
LOC_Os01g47600OsAffx.9317.1.S1_x_at7/111+27563367..27566722HMG box family protein, expressed
LOC_Os01g47610OsAffx.11508.1.S1_at11/111+27567143..27569358lipase class 3 family protein, putative, expressed
LOC_Os01g47620Os.32834.1.S1_at11/111+27570291..27572893expressed protein
LOC_Os01g47620Os.32834.2.S1_x_at10/111+27570291..27572893expressed protein
LOC_Os01g47630Os.19141.1.S1_at11/111+27573171..27574796expressed protein
LOC_Os01g47630OsAffx.32311.1.S1_x_at3/111+27573171..27574796expressed protein
LOC_Os01g47630Os.48833.1.A1_s_at2/111+27573171..27574796expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006644biological_processphospholipid metabolism
GO:0006950biological_processresponse to stress
GO:0009738biological_processabscisic acid mediated signaling
GO:0005887cellular_componentintegral to plasma membrane
GO:0008195molecular_functionphosphatidate phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15706.1.S1_a_at--775--8571Chr01:27555443..27555467 (25 bp)
TGGTTGCCTCTGTCTGCTATCTTCA
LOC_Os01g47580
Os.15706.1.S1_a_at--468--9472Chr01:20967199..20967218 (20 bp)
TCTGTCTGCTATCTTCAGTTCTTCC
NONE
Os.15706.1.S1_a_at--606--9071Chr01:27555429..27555453 (25 bp)
TGCTATCTTCAGTTCTTCCCGGCTC
LOC_Os01g47580
Os.15706.1.S1_a_at--1149--4251Chr01:27555413..27555435 (23 bp)
CCGGCTCCTTCAGATGAGAAAGGGT
LOC_Os01g47580
Os.15706.1.S1_a_at--975--5971Chr01:27553503..27553601 (25 bp)
GAGAAAGGGTTCTGGCCTCACGCGC
LOC_Os01g47580
Os.15706.1.S1_a_at--127--8451Chr01:27553491..27553515 (25 bp)
TGGCCTCACGCGCACTTTAGGTACA
LOC_Os01g47580
Os.15706.1.S1_a_at--377--4571Chr01:27553482..27553506 (25 bp)
GCGCACTTTAGGTACATCACCGAGA
LOC_Os01g47580
Os.15706.1.S1_a_at--478--3311Chr01:27553479..27553503 (25 bp)
CACTTTAGGTACATCACCGAGAGGG
LOC_Os01g47580
Os.15706.1.S1_a_at--819--7611Chr01:27553456..27553480 (25 bp)
GGGAAGCGAGAACCCAACGCAGCAA
LOC_Os01g47580
Os.15706.1.S1_a_at--273--1651Chr01:27553452..27553476 (25 bp)
AGCGAGAACCCAACGCAGCAAGCCA
LOC_Os01g47580
Os.15706.1.S1_a_at--106--3351Chr01:27553429..27553453 (25 bp)
CACCGAACCACTGGACGCCATGGAA
LOC_Os01g47580
Target Sequence 
TGGTTGCCTCTGTCTGCTATCTTCAGTTCTTCCCGGCTCCTTCAGATGAGAAAGGGTTCTGGCCTCACGCGCACTTTAGG
TACATCACCGAGAGGGGAAGCGAGAACCCAACGCAGCAAGCCACCGAACCACTGGACGCCATGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15706.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis