Browse Element(s) Details


Os.15725.1.S1_at

Description gb:AK100733.1
DB_XREF= gi:32985942
TID=Os.15725.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15725 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023117O12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023117O12, full insert sequence.
FL= gb:AK100733.1 gb:AK061073.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6405011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63990NANA3+36104984..36110492transposon protein, putative, Mutator sub-class
LOC_Os03g64010Os.54448.1.S1_s_at11/113+36114179..36118964expressed protein
LOC_Os03g64010Os.54448.1.S1_x_at5/113+36114179..36118964expressed protein
LOC_Os03g64010Os.11066.1.S1_at2/113+36114179..36118964expressed protein
LOC_Os03g64010Os.52532.1.S1_x_at1/113+36114179..36118964expressed protein
LOC_Os03g64020Os.15427.1.S1_at11/113+36119589..36122138expressed protein
LOC_Os03g64030Os.51249.1.S1_at11/113+36123677..36125345expressed protein
LOC_Os03g64030Os.18556.1.S1_x_at10/113+36123677..36125345expressed protein
LOC_Os03g64050Os.15725.1.S1_at11/113+36128251..36129562expressed protein
LOC_Os03g64060OsAffx.25815.1.S1_s_at11/113+36132339..36132822expressed protein
LOC_Os03g64070Os.21276.1.S1_at10/113+36142945..36144143Lysine Decarboxylase, putative, expressed
LOC_Os03g64080Os.9258.1.S1_at11/113+36146529..36161887retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g64080OsAffx.8397.1.S1_at1/113+36146529..36161887retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15725.1.S1_at--890--3211Chr03:36129033..36129057 (25 bp)
CAAGTTCGTCGAGCCCGTCAGGGAG
LOC_Os03g64050
Os.15725.1.S1_at--566--9611Chr03:36129071..36129095 (25 bp)
TCAGGCTTCCTTTTCTCAAGTACGT
LOC_Os03g64050
Os.15725.1.S1_at--1106--2231Chr03:36129166..36129190 (25 bp)
AAATTGCTAGCCAAGGCCTACCTAT
LOC_Os03g64050
Os.15725.1.S1_at--1050--191Chr03:36129209..36129233 (25 bp)
ATTTGCGTTCACTGCTGGCTACTAA
LOC_Os03g64050
Os.15725.1.S1_at--5--9771Chr03:36129231..36129255 (25 bp)
TAAGTACTGATTCATTCCTCCCCTT
LOC_Os03g64050
Os.15725.1.S1_at--474--2271Chr03:36129268..36129292 (25 bp)
AAATCTGTCATATGGAGCGCGTGCT
LOC_Os03g64050
Os.15725.1.S1_at--773--7991Chr03:36129302..36129326 (25 bp)
GGATGAGTATCTTACCACTTCTTCC
LOC_Os03g64050
Os.15725.1.S1_at--95--9771Chr03:36129439..36129463 (25 bp)
TAATGCTTCTTTCTTCCTACTTACA
LOC_Os03g64050
Os.15725.1.S1_at--1020--4291Chr03:36129454..36129478 (25 bp)
CCTACTTACATTACTATACTCTCCT
LOC_Os03g64050
Os.15725.1.S1_at--876--2291Chr03:36129489..36129513 (25 bp)
AAATGTGTACTGTCGGCAGCTCCAA
LOC_Os03g64050
Os.15725.1.S1_at--997--8251Chr03:36129503..36129524 (22 bp)
GGCAGCTCCAATTGTACTCATGAAG
LOC_Os03g64050
Target Sequence 
CAAGTTCGTCGAGCCCGTCAGGGAGGCCCAGAAGGCGGTCAGGCTTCCTTTTCTCAAGTACGTCGACGCCAAGGGCCTCC
CCATCGCCAACGACTACACGCACCTCACCACCCCGGCGCAGGTCAAGCTCGGCAAATTGCTAGCCAAGGCCTACCTATCC
ACGCTCTAATTATATCATTTGCGTTCACTGCTGGCTACTAAGTACTGATTCATTCCTCCCCTTCCCCTCTATGCAAAATC
TGTCATATGGAGCGCGTGCTGTATGTAGGGGATGAGTATCTTACCACTTCTTCCTTCATTCCGGATTAAAATATAATGTT
ACTGATTTTCTTTTTCCCACAATTATTACTCCACTACTTTGGTTATTACACACACACAGGACAGACACCTGGATTGATTT
CTGGACTAATGCTTCTTTCTTCCTACTTACATTACTATACTCTCCTAGTACTCCTGAAATGTGTACTGTCGGCAGCTCCA
ATTGTACTCATGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15725.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis