Browse Element(s) Details


Os.15759.1.S1_at

Description gb:AB104466.1
DB_XREF= gi:28557152
GEN=OsORC2
TID=Os.15759.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15759 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsORC2 mRNA for origin recognition complex2, complete cds.
PROD=origin recognition complex2
FL= gb:AB104466.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0864011/11Origin recognition complex subunit 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08600Os.50009.1.S1_at11/113+4407955..4413278glycogenin glucosyltransferase, putative, expressed
LOC_Os03g08610Os.9148.1.S1_at11/113+4413677..4417010leucine-rich repeat family protein, putative, expressed
LOC_Os03g08620Os.9079.1.S1_at1/113+4416899..4418991B3 DNA binding domain containing protein, expressed
LOC_Os03g08630Os.52148.1.S1_at11/113+4423132..4425588dihydrokaempferol 4-reductase, putative, expressed
LOC_Os03g08640Os.15759.1.S1_at11/113+4425830..4428044Origin recognition complex subunit 2, putative, expressed
LOC_Os03g08660OsAffx.25032.1.S1_s_at2/113+4443307..4444212satase isoform II, putative
LOC_Os03g08670OsAffx.3175.1.S1_at11/113+4446746..4447704hypothetical protein
LOC_Os03g08670Os.31623.1.S1_x_at1/113+4446746..4447704hypothetical protein
LOC_Os03g08670Os.31623.1.S1_at1/113+4446746..4447704hypothetical protein
LOC_Os03g08680Os.52797.1.S1_at7/113+4450739..4455226Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os03g08680Os.19940.1.S1_s_at1/113+4450739..4455226Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
GO:0000808cellular_componentorigin recognition complex
GO:0003688molecular_functionDNA replication origin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15759.1.S1_at--36--7251Chr03:4426406..4426430 (25 bp)
GTCCCAACGTTTGCACCTTACAAAG
LOC_Os03g08640
Os.15759.1.S1_at--215--1851Chr03:4426400..4426424 (25 bp)
ACGTTTGCACCTTACAAAGTTGAAG
LOC_Os03g08640
Os.15759.1.S1_at--520--1031Chr03:4426383..4426407 (25 bp)
AGTTGAAGGTGTGTTCTACCCCTTG
LOC_Os03g08640
Os.15759.1.S1_at--1016--9931Chr03:4426367..4426391 (25 bp)
TACCCCTTGATTCTTGCCAGCGGCG
LOC_Os03g08640
Os.15759.1.S1_at--178--3791Chr03:4426316..4426340 (25 bp)
CTCGTTGTTCTGCAAAGCCTGACAC
LOC_Os03g08640
Os.15759.1.S1_at--511--10551Chr03:4426111..4426135 (25 bp)
TTCTTGTAAGCAGTCAAGTGACGCT
LOC_Os03g08640
Os.15759.1.S1_at--1006--4351Chr03:4426080..4426104 (25 bp)
CCACCTGACGGAGTTTAAAGACCAT
LOC_Os03g08640
Os.15759.1.S1_at--73--1431Chr03:4426040..4426064 (25 bp)
AGAAAGCACTCTGATGGCCAAGATT
LOC_Os03g08640
Os.15759.1.S1_at--974--8871Chr03:4426029..4426053 (25 bp)
TGATGGCCAAGATTGCCTCCACATT
LOC_Os03g08640
Os.15759.1.S1_at--893--9211Chr03:4426012..4426036 (25 bp)
TCCACATTCCTCTTGTTTCTGATGC
LOC_Os03g08640
Os.15759.1.S1_at--1066--6811Chr03:4425844..4425868 (25 bp)
GTTTATCAAATAGCTGCTTGTGTCA
LOC_Os03g08640
Target Sequence 
GTCCCAACGTTTGCACCTTACAAAGTTGAAGGTGTGTTCTACCCCTTGATTCTTGCCAGCGGCGGTCATGCCCAAACCAT
GAAAACCGCCCTCGTTGTTCTGCAAAGCCTGACACCAAATGCGCAAAGTGTCNTNANGAGTTCNTTGCTGNAATATCANG
TTGGCACACGAGAANGGAGGAAGGTATGCATTTCAGTAGCTTGTATACCAAANTGCCGTGAGCGNTTTCTTGTAAGCAGT
CAAGTGACGCTGAANTCCCACCTGACGGAGTTTAAAGACCATGATCTGGTGAAGATCAGAAAGCACTCTGATGGCCAAGA
TTGCCTCCACATTCCTCTTGTTTCTGATGCGCTGGAGAAATTGCTTCAGGAATTGACCTGACCAGCTGGGTTTGGAATTT
TTTTTTAATTGATCGANCGGTCAGTGATCACCATGGAAACAGCTCAGTTGTGTATTCCAATCTGTAGTTGTATATGGATT
ANTCACCATTTCAGTTTATCAAATAGCTGCTTGTGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15759.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis