Browse Element(s) Details


Os.15774.1.S1_at

Description gb:AK067152.1
DB_XREF= gi:32977170
TID=Os.15774.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.15774 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013096K21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013096K21, full insert sequence.
FL= gb:AK067152.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4837011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48330OsAffx.23718.2.S1_x_at11/115+27618711..27622267Eukaryotic aspartyl protease family protein, expressed
LOC_Os05g48330OsAffx.23718.1.S1_x_at3/115+27618711..27622267Eukaryotic aspartyl protease family protein, expressed
LOC_Os05g48340Os.5594.1.S1_at11/115+27629080..27634433proteasome, putative, expressed
LOC_Os05g48350NANA5+27636556..27636801hypothetical protein
LOC_Os05g48360Os.37910.1.S1_at11/115+27640132..27644189MAC/Perforin domain containing protein, expressed
LOC_Os05g48370Os.15774.1.S1_at11/115+27646303..27648140expressed protein
LOC_Os05g48380Os.50544.1.S1_at11/115+27650625..27655048ubiquitin-conjugating enzyme E2, putative, expressed
LOC_Os05g48390Os.15185.1.S1_s_at11/115+27656755..27664453Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os05g48400OsAffx.4651.1.S1_at11/115+27666072..27666717hypothetical protein
LOC_Os05g48410Os.8883.1.S1_at11/115+27672841..2767585750S ribosomal protein L21, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15774.1.S1_at--209--9091Chr05:27646879..27646903 (25 bp)
TGCTCGCTTACCTCGGGTTAATAGA
LOC_Os05g48370
Os.15774.1.S1_at--513--4791Chr05:27646798..27646822 (25 bp)
GCTCCCTCAGGTTATCTTAAACGCA
LOC_Os05g48370
Os.15774.1.S1_at--1069--9411Chr05:27646714..27646738 (25 bp)
TCGTGCGCTACCTCATGTGTATGAT
LOC_Os05g48370
Os.15774.1.S1_at--214--7591Chr05:27646682..27646706 (25 bp)
GGGCTAAGCATTTTGTGCCCAGCTT
LOC_Os05g48370
Os.15774.1.S1_at--599--9132Chr07:12288633..12289099 (25 bp)
TGCCCAGCTTGAGACCATTTTACAG
NONE
Os.15774.1.S1_at--338--10491Chr05:27646648..27646672 (25 bp)
TTACAGGTATGCAAACCCTCGCGAT
LOC_Os05g48370
Os.15774.1.S1_at--560--8132Chr05:21859388..21859412 (25 bp)
GGACATTGCCATACCATGTGGAGCA
NONE
Os.15774.1.S1_at--1018--1472Chr05:21859409..21859433 (25 bp)
AGCAATACTGCTGTCGGTTCTTCTG
NONE
Os.15774.1.S1_at--1152--10851Chr05:27646541..27646565 (25 bp)
TTGGAGGCGCTTTCTTCATTTGTTC
LOC_Os05g48370
Os.15774.1.S1_at--615--2971Chr05:27646489..27646513 (25 bp)
AATGGTTTCCACAGTTAGCTCTTAA
LOC_Os05g48370
Os.15774.1.S1_at--499--2171Chr05:27646378..27646402 (25 bp)
ACACTTACATACCTGCCTTGTTGAA
LOC_Os05g48370
Target Sequence 
TGCTCGCTTACCTCGGGTTAATAGACATGCATTCTGGGAGGACCTTGTGTCATATGGGGGATTAATACTCGACGGGTTCT
TGCTCCCTCAGGTTATCTTAAACGCATGCTTAGGNTCCAAAGTGAAGGCACTTTCCCCGGGATTTTACATTGGAAGCACC
ATGATTCGTGCGCTACCTCATGTGTATGATGTGTTCAGGGCTAAGCATTTTGTGCCCAGCTTGAGACCATTTTACAGGTA
TGCAAACCCTCGCGATGATCTCTTCAGCCTNGCATGGGACATTGCCATACCATGTGGAGCAATACTGCTGTCGGTTCTTC
TGTTCCTTCAGCAGCGGTTTGGAGGCGCTTTCTTCATTTGTTCGAAGAACAGGAAGGCAAGTGAATATGAAATGGTTTCC
ACAGTTAGCTCTTAACAAGTTTTCATCTGTGCAAGAGAAATATAGAGAAGGTTTCTATAGGCTAAGAAATAGGTTGCTTC
TTATGTCTATGTTTGCTTTACACACTTACATACCTGCCTTGTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15774.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis