Browse Element(s) Details


Os.15841.1.S1_a_at

Description gb:AK058243.1
DB_XREF= gi:32968261
TID=Os.15841.1
CNT=12
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.15841 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023101N09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-011-H08, full insert sequence.
FL= gb:AK099186.1 gb:AK058243.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0529011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05230OsAffx.30825.1.S1_at11/1111+2314669..2315574Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g05240OsAffx.30826.1.S1_at11/1111+2317594..2319117PAN domain containing protein
LOC_Os11g05250NANA11+2320717..2323376hypothetical protein
LOC_Os11g05260Os.9756.1.S1_a_at11/1111+2325827..2329111phosphoglycerate mutase family protein, expressed
LOC_Os11g05270OsAffx.18683.1.S1_at11/1111+2331554..2332567hypothetical protein
LOC_Os11g05280Os.55754.1.S1_x_at1/1111+2335605..2336621hypothetical protein
LOC_Os11g05280Os.21883.1.S1_at1/1111+2335605..2336621hypothetical protein
LOC_Os11g05290Os.15841.1.S1_a_at11/1111+2339479..2340541expressed protein
LOC_Os11g05300OsAffx.18684.1.S1_at11/1111+2341589..2343975Zinc finger, C3HC4 type family protein
LOC_Os11g05310NANA11+2347198..2347443hypothetical protein
LOC_Os11g05320OsAffx.31595.1.S1_at11/1111+2352335..2356702Protein kinase domain containing protein, expressed
LOC_Os11g05320OsAffx.31595.1.S1_x_at11/1111+2352335..2356702Protein kinase domain containing protein, expressed
LOC_Os11g05330Os.18650.1.S1_at11/1111+2359741..2360341expressed protein
LOC_Os11g05340OsAffx.18686.1.S1_at10/1111+2360348..2367995transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15841.1.S1_a_at--1092--671Chr11:2340363..2340387 (25 bp)
ATGACATCCTGCAAGGCATGACCAA
LOC_Os11g05290
Os.15841.1.S1_a_at--613--4991Chr11:2340348..2340372 (25 bp)
GCATGACCAAGCTTGTCTCGGAGAT
LOC_Os11g05290
Os.15841.1.S1_a_at--561--4811Chr11:2339888..2339912 (25 bp)
GCTCTGAAGATCTGACGACCTACAT
LOC_Os11g05290
Os.15841.1.S1_a_at--1127--8931Chr11:2339876..2339900 (25 bp)
TGACGACCTACATGAGCCACGAGAG
LOC_Os11g05290
Os.15841.1.S1_a_at--1034--5851Chr11:2339863..2339887 (25 bp)
GAGCCACGAGAGACACCAGGAGTTC
LOC_Os11g05290
Os.15841.1.S1_a_at--487--2071Chr11:2339728..2339752 (25 bp)
ACATCAACTGTCCATCAAGCATCCA
LOC_Os11g05290
Os.15841.1.S1_a_at--114--4971Chr11:2339694..2339718 (25 bp)
GCATCAACCATTGCATCATTGTTCC
LOC_Os11g05290
Os.15841.1.S1_a_at--1033--1171Chr11:2339668..2339692 (25 bp)
AGTACTTTCAGGTATCCATCCATCC
LOC_Os11g05290
Os.15841.1.S1_a_at--111--8751Chr11:2339546..2339570 (25 bp)
TGTAATGCAGCTCTATCCCGTGCAT
LOC_Os11g05290
Os.15841.1.S1_a_at--856--3991Chr11:2339528..2339552 (25 bp)
CGTGCATTCCGTTCAAAGCTTGTTC
LOC_Os11g05290
Os.15841.1.S1_a_at--285--2691Chr11:2339513..2339537 (25 bp)
AAGCTTGTTCGGTTATTCTTGGAAT
LOC_Os11g05290
Target Sequence 
ATGACATCCTGCAAGGCATGACCAAGCTTGTCTCGGAGATGGACATGGTGAAATCCTTCGAGTGGGGGAAGGATGTGTTG
AACCAGGAGATGCTGACACAGGGCTTCACTCATGTCTTCTCGCTGACCTTCGCGAGCTCTGAAGATCTGACGACCTACAT
GAGCCACGAGAGACACCAGGAGTTCGCCGGCACGTTCATGGCGGCGATCGACAAGGTCGTCGTCGTCGACTTCCCCGTCG
TCGCCTCCAAGCCTGCACCACCGGCGGCACCGGCGGCGGCGGCGTGATGATGACGACATCAACTGTCCATCAAGCATCCA
TCCGCCATNGCATCAACCATTGCATCATTGTTCCAAGTACTTTCAGGTATCCATCCATCCATCTACACACGCAGATAGCT
GTGATAGATGTACCTTAGGTTCCATTATTGCATGTTTCTGCTGCTTCAGTGTTGAGCTGGTGTAGCTTAGCTAAAGCTGT
AATGCAGCTCTATCCCGTGCATTCCGTTCAAAGCTTGTTCGGTTATTCTTGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15841.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis