Browse Element(s) Details


Os.15914.1.S1_at

Description gb:AK105382.1
DB_XREF= gi:32990591
TID=Os.15914.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.15914 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-121-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-B06, full insert sequence.
FL= gb:AK105382.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2335011/11glycosyl transferase family 20 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23340Os.39238.1.A1_at11/119+13854139..13855577expressed protein
LOC_Os09g23340OsAffx.29984.1.S1_s_at10/119+13854139..13855577expressed protein
LOC_Os09g23340OsAffx.29984.1.S1_at2/119+13854139..13855577expressed protein
LOC_Os09g23350Os.15914.1.S1_at11/119+13874998..13878642glycosyl transferase family 20 protein, putative, expressed
LOC_Os09g23360Os.51840.1.S1_at11/119+13879664..13882886expressed protein
LOC_Os09g23370Os.16406.1.S1_at11/119+13886390..13889111expressed protein
LOC_Os09g23370Os.16406.2.S1_at9/119+13886390..13889111expressed protein
LOC_Os09g23380Os.27823.1.S1_at11/119+13890808..13896338RNA-metabolising metallo-beta-lactamase family protein, expressed
LOC_Os09g23390OsAffx.29985.1.S1_at11/119+13900842..13901812hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005992biological_processtrehalose biosynthesis
GO:0003825molecular_functionalpha,alpha-trehalose-phosphate synthase (UDP-forming) activity
GO:0004805molecular_functiontrehalose-phosphatase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15914.1.S1_at--698--7731Chr09:13878073..13878097 (25 bp)
GGTGTGTACAGAAACTCGGCCGAGA
LOC_Os09g23350
Os.15914.1.S1_at--872--9691Chr09:13878154..13878178 (25 bp)
TCACAGTCAGATCAGGCTCCAAAGT
LOC_Os09g23350
Os.15914.1.S1_at--567--7651Chr09:13878185..13878209 (25 bp)
GGGATGAATCCGCAACCACTGGAGC
LOC_Os09g23350
Os.15914.1.S1_at--597--3331Chr09:13878216..13878240 (25 bp)
CACTCCTTTTGCTGGCATGGTGCAG
LOC_Os09g23350
Os.15914.1.S1_at--1144--3271Chr09:13878245..13878269 (25 bp)
CAAATGGTTGGTGCGTACTACCCTT
LOC_Os09g23350
Os.15914.1.S1_at--229--9831Chr09:13878260..13878284 (25 bp)
TACTACCCTTTGGTGGAGGCGCTAA
LOC_Os09g23350
Os.15914.1.S1_at--596--8011Chr09:13878274..13878298 (25 bp)
GGAGGCGCTAATTATTTCATCTTCT
LOC_Os09g23350
Os.15914.1.S1_at--221--4811Chr09:13878317..13878341 (25 bp)
GCTCGTGCTGTACTGTGCCCATGTA
LOC_Os09g23350
Os.15914.1.S1_at--899--11Chr09:13878372..13878396 (25 bp)
ATTGGATTAGGTCTCTTCCGTTCCA
LOC_Os09g23350
Os.15914.1.S1_at--488--1351Chr09:13878573..13878597 (25 bp)
AGAGATTAATGTGTTCCTGGCTGAA
LOC_Os09g23350
Os.15914.1.S1_at--993--2411Chr09:13878606..13878630 (25 bp)
AAAAAACATTTCTTCGTCTGCTCCG
LOC_Os09g23350
Target Sequence 
GGTGTGTACAGAAACTCGGCCGAGAAATTANCCCCCCCCCCCCCNATGTTCTTCTATCAAAAACTCAGATCCATCTCACC
ATCACAGTCAGATCAGGCTCCAAAGTTTGGCCGGGATGAATCCGCAACCACTGGAGCCGGAGCCACTCCTTTTGCTGGCA
TGGTGCAGGTGTCAAATGGTTGGTGCGTACTACCCTTTGGTGGAGGCGCTAATTATTTCATCTTCTTTCTTTCTTTTCTT
TCGGGCTCGTGCTGTACTGTGCCCATGTACTGCTGCTGCACATTGCTGTGGGGCTTTGGATTGGATTAGGTCTCTTCCGT
TCCAGCTTGTGTGGTAGCAGCAGTAGTTCTTGCTGCCAATGATGGATGGCAATAGTGGAGGCTTGTGTTTTTCTTGGTGT
TATGCCGTTTGGGGGTTAAAAAACAAAGAGGCTATGATCATGCTGGTGATGAGATAAGGCTATAATGCTGTCTATGTTGA
ATTGTAGTAACCGGCTGTAAAGAGATTAATGTGTTCCTGGCTGAATTGAGCAAAAAAAACATTTCTTCGTCTGCTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15914.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis